UW-GAC/gregor_data_models

Issues

• data type is inconsistent for called_variants_dna_short_read.variant_types

  #19 opened 2 years ago by smgogarten
  0

• Add fields to data model to support QC efforts

  #1 opened 2 years ago by bheavner
  3

• dbml syntax error when copying to dbdiagram

  #3 opened 2 years ago by bheavner
  2

• ID tracking

  #6 opened 2 years ago by bheavner
  1

• center prefix requirements on IDs is inconsistent

  #18 opened 2 years ago by bheavner
  0

• in phenotype table, is participant_id + term_id sufficient for uniqueness?

  #17 opened 2 years ago by smgogarten
  0

• align with GA4GH phenopackets standard

  #16 opened 2 years ago by bheavner
  0

• capitalize DNA and RNA

  #14 opened 2 years ago by bheavner
  1

• data model should include field for data model version

  #11 opened 2 years ago by bheavner
  1

• add support for sharing RNA-seq TPM counts to data model

  #15 opened 2 years ago by bheavner
  0

• consider adding dbGaP subject id as optional field

  #12 opened 2 years ago by bheavner
  0

• experiments - read length as number may not always work

  #10 opened 2 years ago by bheavner
  0

• experiments - make seq_library_prep_kit_method an enumeration?

  #9 opened 2 years ago by bheavner
  0

• make analyte.primary_biosample_id required when adding RNA-seq or long read tables?

  #8 opened 2 years ago by bheavner
  0

• add field to analyte table to differentiate cell cultures?

  #7 opened 2 years ago by bheavner
  0

• align with GA4GH Variation Representation Standard

  #5 opened 2 years ago by bheavner
  0

• called_variant_short_read table

  #4 opened 3 years ago by bheavner
  0

• 1:1, 1:many, many:1?

  #2 opened 3 years ago by bheavner
  2