smgogarten
Senior research scientist in the Genetic Analysis Center
Department of Biostatistics, University of WashingtonSeattle, WA
Pinned Repositories
anvil-portal
The front-facing AnVIL user portal
GENESIS_backup
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GENESIS.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GENESIS.
githubCribsheet
Notes and tips for using github with Biocondcutor
GWASTools
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
PlateMap
R package for creating genotyping plate maps
SeqVarTools
An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis
analysis_pipeline
TOPMed analysis pipeline
anvil-util-workflows
Utilities for checking files in AnVIL
AnvilDataModels
R package to work with AnVIL data models
GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
smgogarten's Repositories
smgogarten/GWASTools
Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
smgogarten/SeqVarTools
An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis
smgogarten/PlateMap
R package for creating genotyping plate maps
smgogarten/anvil-portal
The front-facing AnVIL user portal
smgogarten/GENESIS_backup
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GENESIS.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GENESIS.
smgogarten/githubCribsheet
Notes and tips for using github with Biocondcutor
smgogarten/GoogleGenomicsTest
smgogarten/GWASdata
Example data for the GWASTools package
smgogarten/GWASExactHW
:exclamation: This is a read-only mirror of the CRAN R package repository. GWASExactHW — Exact Hardy-Weinburg testing for Genome Wide Association Studies
smgogarten/my-first-blog
smgogarten/SeqArray
Big Data Management of Genome-wide Sequencing Variants
smgogarten/SNPRelate
Parallel computing toolset for relatedness and principal component analysis of SNP data
smgogarten/VCF_projects
smgogarten/wdl
Workflow Description Language - Specification and Implementations