Pulse Bioinformatics, University of Saskatchewan
Our group has a strong focus on creating flexible, re-usable open-source software during the course of our work.
Saskatoon, Saskatchewan
Pinned Repositories
analyzedphenotypes
Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.
chado_custom_search
Provides custom search functionality for those who don't wish to use Drupal Views.
genotypes_loader
A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.
haplotype-map-embed
Provide a page for each haplotype-map in Tripal site.
nd_genotypes
Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.
rawphenotypes
A Tripal module for storing raw phenotypic data. Specifically meant to help researchers contribute raw data, visualize summaries and download for further analysis.
tripal_bibtex
A BibTEX importer for Tripal Publications.
tripal_germplasm_importer
Tripal 3 importer for saving germplasm into chado stock tables.
tripal_qtl
Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.
vcf_filter
Form interface so users can custom filter existing VCF files and export in a variety of formats.
Pulse Bioinformatics, University of Saskatchewan's Repositories
UofS-Pulse-Binfo/tripal_daemon
Drupal/Tripal: Implements drush daemon to automatically run requested Tripal jobs.
UofS-Pulse-Binfo/cross_management
Drupal:Tripal: Management of breeding program crosses integrating with Tripal Stock/Germplasm.
UofS-Pulse-Binfo/drupal7-tripal3
Drupal 7.x Tripal 3.x Development Environment for Cloud9. Includes a script to create a fresh Tripal 3.x site quickly.
UofS-Pulse-Binfo/generate_trpdata
Generate various types of data for testing Tripal functionality
UofS-Pulse-Binfo/kp_entities
Creates and configures all Tripal Content Types used by KnowPulse.
UofS-Pulse-Binfo/kp_nodes
Drupal/Tripal: KnowPulse Node-specific themeing.
UofS-Pulse-Binfo/kp_views
Drupal/Tripal: KnowPulse-specific Views
UofS-Pulse-Binfo/posconvert
Converts positions in a tab-delimited file (e.g. VCF) from Lc0.8 to Lc1.2
UofS-Pulse-Binfo/user_charts
User-driven D3.js Charts that provide forms that allowing users to input data influencing D3.js charts.