UriNeri

UriNeri's Stars

• lmdu/pyfastx

  a python package for fast random access to sequences from plain and gzipped FASTA/Q files

  Language:C28823

• biodatageeks/polars-bio-workshop

  Language:Jupyter Notebook1

• pentamorfico/plasmid_network

  An interactive app that loads plasmid antiphage defense metadata and edge data from Parquet files and renders a GPU-accelerated network visualization using Graphology and Sigma.js.

  Language:JavaScript51

• althonos/pysylph

  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.

  Language:Rust20

• bbushnell/BBTools

  BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

  Language:Java7

• cmmr/EsViritu

  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

  Language:Python395

• SillyTavern/SillyTavern

  LLM Frontend for Power Users.

  Language:JavaScript18.5k4k

• sib-swiss/sparql-llm

  🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

  Language:Jupyter Notebook6111

• rdrp-summit/awesome-rna-virus-tools

  An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses

  Language:HTML171

• dashdeckers/polars_list_utils

  Polars Plugin for List-type Columns

  Language:Rust10

• junghoon-son/polars-utils

  Language:Python15

• AnacletoLAB/grape

  🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

  Language:Jupyter Notebook60838

• talmago/fast_gliner

  Python bindings to Inference engine for GLiNER models written in Rust

  Language:Rust4

• mesejo/trrex

  Efficient string matching with regular expressions

  Language:Python1446

• jackboyla/GLiREL

  Generalist and Lightweight Model for Relation Extraction (Extract any relationship types from text)

  Language:Python23816

• mmmaurer/elfen

  A python package to efficiently extract linguistic features for text/NLP datasets

  Language:Python43

• cogent3/cogent3

  Comparative Genomics Toolkit 3

  Language:Python13266

• pyranges/pyranges_1.x

  PyRanges as a DataFrame subclass.

  Language:Python194

• gabrielvpina/viralquest

  A user-friendly pipeline for viral diversity analysis and characterization.

  Language:Python91

• titipata/pubmed_parser

  :clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

  Language:Python691177

• astral-sh/ty-vscode

  A Visual Studio Code extension for ty.

  Language:TypeScript2255

• metapub/metapub

  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.

  Language:Python12727

• matthewfallan/SARS-CoV-2_genome_structure

  Language:PostScript2

• matthewfallan/rouls

  Rouskin Lab Tools

  Language:HTML32

• EnactProtocol/encat-spec-and-tools

  protocol spec and tools

  Language:Python352

• DavidOsherdiagnostica/data-gov-il-mcp

  Advanced MCP server for seamless access to Israeli Government Open Data

  Language:JavaScript5715

• RagnarGrootKoerkamp/sassy

  Fast approximate string searching

  Language:Rust543

• bede/deacon

  FASTX search and [host] depletion using minimizers

  Language:Rust8412

• althonos/pyaragorn

  Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

  Language:Cython5

• au70ma70n/butterfish

  A shell with AI superpowers

  Language:Go2