Pinned Repositories
NGSCheckMate
Software program for checking sample matching for NGS data
abra-nf
Nextflow pipeline for ABRA (Assembly Based ReAligner)
BQSR-nf
Nextflow script for base quality score recalibration of bam files using GATK
Methylation_analysis_scripts
R scripts for Illumina array analyses
mutspec_annot
Annotate VCF files with Annovar
quantiseq-nf
Pipeline to run software quanTIseq in parallel to quantify immune cell content from RNA-seq data
RNAseq-fusion-nf
Fusion-genes discovery from RNAseq data using STAR-Fusion
RNAseq-nf
RNAseq analysis pipeline
RNAseq-transcript-nf
Transcript-level RNA-seq analysis
table_annovar-nf
annotation of variants with annovar and nextflow
V-Catherine's Repositories
V-Catherine/abra-nf
Nextflow pipeline for ABRA (Assembly Based ReAligner)
V-Catherine/BQSR-nf
Nextflow script for base quality score recalibration of bam files using GATK
V-Catherine/Methylation_analysis_scripts
R scripts for Illumina array analyses
V-Catherine/mutspec_annot
Annotate VCF files with Annovar
V-Catherine/quantiseq-nf
Pipeline to run software quanTIseq in parallel to quantify immune cell content from RNA-seq data
V-Catherine/RNAseq-fusion-nf
Fusion-genes discovery from RNAseq data using STAR-Fusion
V-Catherine/RNAseq-nf
RNAseq analysis pipeline
V-Catherine/RNAseq-transcript-nf
Transcript-level RNA-seq analysis
V-Catherine/table_annovar-nf
annotation of variants with annovar and nextflow