VEuPathDB Bioinformatics Resource Center

Pinned Repositories

ApiCommonData
Language:Perl3 24 63
ApiCommonWebsite
Language:Perl3 21 241
EbrcWebsiteCommon
Language:Perl3 23 253
eda-workspace-client-core
Language:TypeScript2 25 01
EdaDataService
Language:Java2 23 2210
gente
A web application for self-service LDAP password changes
Language:Perl2 3 00
humann-nextflow
run kneaddata+humann for a list of samples using nextflow
Language:Python5 21 01
MicrobiomeModel
Language:Java2 27 00
MicrobiomeWebsite
Language:R2 25 90
WDKClient
Language:JavaScript2 24 344

VEuPathDB Bioinformatics Resource Center's Repositories

VEuPathDB/jenkins-website-job-generator
Generate Jenkins job configurations for EuPathDB core sites using the job-dsl plugin
Language:Groovy1
VEuPathDB/ApiCommonWorkflow
Language:Perl0 23 01
VEuPathDB/ApidbSchema
SQL and scripts to install the ApiDB schema
Language:PLSQL0 16 00
VEuPathDB/docker-alpine-dev-base
Alpine Linux image with Oracle Instant Client and OpenJDK
Language:Dockerfile
VEuPathDB/docs-api-schema
Common/Generic RAML type definitions.
Language:JSON
VEuPathDB/eda-nextflow
Language:Nextflow18 0
VEuPathDB/EdaDatasets
Language:Perl20 1
VEuPathDB/lib-java-raml-parser
Language:Java
VEuPathDB/lib-prometheus-jvm-stats
JVM Stats included in regular Prometheus output.
Language:Kotlin22 0
VEuPathDB/MicrobiomeWorkflow
Language:Perl24 151
VEuPathDB/packer-ebrc
Packer templates for EBRC
Language:Shell4 0
VEuPathDB/rest-api-example-scripts
A collecton of example scripts that exhibit the power of VEuPathDB REST APIs
Language:Jupyter Notebook17 01
VEuPathDB/SchemaInstallUtils
libraries used to help install schemas
Language:Perl17 0
VEuPathDB/SimpleAbundanceFormat
Formerly known as PopBio-interchange-format
Language:Perl
VEuPathDB/TestDatasets
25 0
VEuPathDB/tomcat-instance-framework
Manage multiple Tomcat instances for EuPathDB
Language:Shell5 0
VEuPathDB/tsrc
Repository containing the tsrc multi-repository manifest
25 21
VEuPathDB/vagrant-puppet
Development environment for EBRC Puppet deployments
Language:Shell2 0
VEuPathDB/vagrant-rocky8-webserver
Testbed for building websites on Rocky 8 with Java 21 and Tomcat 10
Language:Ruby
VEuPathDB/vdi-docker-plugin-base
Docker image for VDI handler plugins.
Language:Perl
VEuPathDB/vdi-lib-plugin-rnaseq
Code shared between the RnaSeq and BigWig VDI Plugins
Language:Perl18 0
VEuPathDB/vdi-plugin-bigwig
Language:Perl19 1
VEuPathDB/vdi-plugin-biom
Language:Python20 4
VEuPathDB/vdi-plugin-example
VDI handler plugin example repository.
Language:Shell20 2
VEuPathDB/vdi-plugin-genelist
Language:Python
VEuPathDB/vdi-plugin-rnaseq
Language:Perl19 1
VEuPathDB/vdi-tests
Test harnesses and data for VDI
Language:Python20 2
VEuPathDB/veupath-redmine-client
Simplified API to interact with VeupathDB Redmine, for EBI operations
Language:Python4 01
VEuPathDB/veupathUtils
A collection of general purpose R helper functions for use in the VEuPathDB project.
Language:R20 211
VEuPathDB/workflow-vdi
NextFlow workflow to be called by ReFlow workflow that creates and submits artifacts to VDI
16 0