Vlasovets

Vlasovets's Stars

• Mu-DS/practical_training

  Material for the MUDS Practical Data Science Training

  Language:HTML143

• zauberzeug/nicegui

  Create web-based user interfaces with Python. The nice way.

  Language:Python9.8k586

• py-why/causal-learn

  Causal Discovery in Python. It also includes (conditional) independence tests and score functions.

  Language:Python1.2k191

• py-why/dowhy

  DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

  Language:Python7.1k934

• optuna/optuna

  A hyperparameter optimization framework

  Language:Python10.8k1k

• SvetlanaUP/Microbiome-conferences-c

  This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

  465

• MobileTeleSystems/CoolGraph

  Make GNN easy to start with

  Language:Jupyter Notebook1214

• amishra-stats/taro-package

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• astral-sh/ruff

  An extremely fast Python linter and code formatter, written in Rust.

  Language:Rust32.3k1.1k

• GraceYoon/SPRING

  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data

  Language:R222

• flatironinstitute/sciware

  Learning materials for scientific software development

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• zaneveld/full_spectrum_bioinformatics

  An open-access bioinformatics text

  Language:Jupyter Notebook8927

• rnnh/bioinfo-notebook

  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.

  Language:Shell15345

• hetio/hetnetpy

  Hetnets in Python (relocated from dhimmel/hetio)

  Language:Python9228

• BenKaehler/q2-makarsa

  A QIIME 2 plugin to generate and visualise microbial networks.

  Language:Python84

• krisrs1128/generative_review

  Code accompanying "Generative Models: An Interdisciplinary Perspective"

  Language:HTML72

• CompVis/latent-diffusion

  High-Resolution Image Synthesis with Latent Diffusion Models

  Language:Jupyter Notebook11.8k1.5k

• kpj/rwrap

  Seamlessly integrate R packages into Python.

  Language:Python211

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python58462

• crowsonkb/mdmm

  The Modified Differential Multiplier Method (MDMM) for PyTorch

  Language:Python5111

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl833226

• micom-dev/micom

  Python package to study microbial communities using metabolic modeling.

  Language:Python9318

• SamLau95/nbinteract

  Create interactive webpages from Jupyter Notebooks

  Language:HTML23322

• bio-ontology-research-group/pathophenodb

  Web application and additional content for PathoPhenoDB

  Language:Python7

• EBI-Metagenomics/holofood-course

  ReadTheDocs/Sphinx documentation source for the "Organisation and utilisation of hologenomic datasets" Holofood course, 2022

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• biocore/redbiom

  Sample search by metadata and features

  Language:Python4520

• bioinformatics-core-shared-training/docker-4-bioinformatics

  Short Course to get Bioinformaticians at CRUK-CI up-to-speed on Docker

  Language:HTML119

• stevetsa/awesome-microbes

  List of computational resources for analyzing microbial sequencing data.

  6629

• pylint-dev/pylint

  It's not just a linter that annoys you!

  Language:Python5.3k1.1k

• python/mypy

  Optional static typing for Python

  Language:Python18.4k2.8k