Tail end error on CancerVar.py
Opened this issue · 2 comments
bgold04 commented
Hello,
I get a multianno file, but I also get these messages.
NOTICE: Multianno output file is written to example/PRE_02_hg19.bin.sorted.withoutchr.hg19_multianno.txt
annovar_outfile is example/PRE_02_hg19.bin.sorted.withoutchr.hg19_multianno.txt
Traceback (most recent call last):
File "CancerVar2.py", line 1900, in <module>
main()
File "CancerVar2.py", line 1866, in main
sum1=check_genes(annovar_outfile)
File "CancerVar2.py", line 652, in check_genes
if sum==0 and re.findall('true',paras['otherinfo'], flags=re.IGNORECASE) :
KeyError: 'otherinfo'
quanliustc commented
which annovar version are you using?
bgold04 commented
Thank you for getting me to update annovar and revert to the original unchanged CancerVar.
Still getting an error message, though, on CentOS 8.
NOTICE: Multianno output file is written to example/PRE_25_hg19.bin.sorted.withoutchr.hg19_multianno.txt
annovar_outfile is example/PRE_25_hg19.bin.sorted.withoutchr.hg19_multianno.txt
Traceback (most recent call last):
File "CancerVar.py", line 1900, in <module>
main()
File "CancerVar.py", line 1866, in main
sum1=check_genes(annovar_outfile)
File "CancerVar.py", line 652, in check_genes
if sum==0 and re.findall('true',paras['otherinfo'], flags=re.IGNORECASE) :
KeyError: 'otherinfo'