A set of scripts for mapping 10X data:
- Cellranger supported via
scripts/pyranger.py - Starsolo supported via
runscripts/starsolo.sh - Kraken metagenomics supported via
runscripts/kraken.sh - Visium supported via
runscripts/visium.sh
The shell based scripts assume this repo present in /mnt/mapcloud, pyranger infers the location itself and is less picky.
On the off chance you read this and care about something, contact kp9 on Mattermost for details.