Pinned Repositories
Bioinfor_researchers_atlas
ENIGMA
A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)
ICAnet
Independent Component Analysis decipher functional modules for better cell clustering and annotation
Inductive-Matrix-Completion
we proposed a type of inductive matrix completion with trace norm regularizer, and presented two practical method for solving trace norm based IMC optimization problem. Using two different tasks and four different benchmark tasks, We showed the max-norm can often be superior to established trace-norm regularization.
LowpassingHM
Improve your single cell gene expression heatmap with one function
LSI_for_batch_effect_correction
MouseGerm_DDX43
All datasets include analyzed scRNA-seq, peak files called from eCLIP-seq datasets, and spliced/unspliced readouts of single cell. And codes for reproducing main results of study
NetID
The pipeline for benchmarking NetID with different imputation methods on any UMI-based scRNA-seq datasets
NetID_package
A scalable method to infer fate specific gene regulatory network from single cell gene expression data
RegVelo
WWXkenmo's Repositories
WWXkenmo/Bioinfor_researchers_atlas
WWXkenmo/ENIGMA
A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)
WWXkenmo/ICAnet
Independent Component Analysis decipher functional modules for better cell clustering and annotation
WWXkenmo/NetID_package
A scalable method to infer fate specific gene regulatory network from single cell gene expression data
WWXkenmo/LowpassingHM
Improve your single cell gene expression heatmap with one function
WWXkenmo/LSI_for_batch_effect_correction
WWXkenmo/ENIGMA_test
test ENIGMA installation
WWXkenmo/MouseGerm_DDX43
All datasets include analyzed scRNA-seq, peak files called from eCLIP-seq datasets, and spliced/unspliced readouts of single cell. And codes for reproducing main results of study
WWXkenmo/NetID
The pipeline for benchmarking NetID with different imputation methods on any UMI-based scRNA-seq datasets
WWXkenmo/RegVelo
WWXkenmo/cellrank
CellRank for directed single-cell fate mapping
WWXkenmo/CIDER
R package CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation
WWXkenmo/ENIGMA_0.1
This repo is for testing the new version of ENIGMA
WWXkenmo/ENIGMA_analysis
WWXkenmo/ENIGMA_docs
WWXkenmo/ENIGMA_Documentation
WWXkenmo/ENIGMA_Documentation_1
WWXkenmo/ENIGMA_test2
test the newest package of ENIGMA
WWXkenmo/graphlayouts
new layout algorithms for network visualizations in R
WWXkenmo/motifmatchr
Fast motif matching in R
WWXkenmo/PIDC_bug
A bug of PIDC algorithm
WWXkenmo/pyENIGMA
a python based implementation of ENIGMA
WWXkenmo/scarches
Reference mapping for single-cell genomics
WWXkenmo/scvelo
RNA Velocity generalized through dynamical modeling
WWXkenmo/scvi-tools
Deep probabilistic analysis of single-cell omics data
WWXkenmo/scVI_vampPrior
A new scVI model with vampPrior
WWXkenmo/seurat
R toolkit for single cell genomics
WWXkenmo/SpiceMix
spatial transcriptome, single cell
WWXkenmo/tabula-sapiens
Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
WWXkenmo/tricycle