WolkeTian's Stars
guorongwu/DynamicBC
Dynamic brain connectome analysis toolbox
cocoanlab/cocoanCORE
Core tools for Cocoan Lab
NSBLab/BrainEigenmodes
Code supporting 'Geometric constraints on human brain function'
netneurolab/neuromaps
A toolbox for comparing brain maps
ReproNim/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
aces/brainbrowser
Web-based visualization tools for neurological data.
CoSMoMVPA/CoSMoMVPA
A lightweight multivariate pattern analysis (MVPA) toolbox in Matlab / Octave
OHBA-analysis/HMM-MAR
Toolbox for segmentation and characterisation of transient connectivity
psychopy/psychopy
For running psychology and neuroscience experiments
ventoy/Ventoy
A new bootable USB solution.
HumanBrainED/NHP-BrainExtraction
aces/cbrain
CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
PennLINC/qsiprep
Preprocessing of diffusion MRI
NeuromatchAcademy/course-content
NMA Computational Neuroscience course
Lerist/FakeLocation
Fake Location
MICA-MNI/micaopen
Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
alfnie/conn
CONN toolbox, development version (conn-toolbox.org)
ANTsX/ANTs
Advanced Normalization Tools (ANTs)
PennLINC/xcpEngine
Official public repository for the XCP Engine. This tool is deprecated in favor of XCP-D and ASLPrep.
bioimagesuiteweb/bisweb
This is the repository for the BioImage Suite Web Project
trendscenter/gift
Group ICA/IVA software (MATLAB)
nipy/heudiconv
Flexible DICOM conversion into structured directory layouts
FCP-INDI/C-PAC
Configurable Pipeline for the Analysis of Connectomes
nipy/nipype
Workflows and interfaces for neuroimaging packages
canlab/MediationToolbox
Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.
YaleMRRC/CPM
poldrack/narps
Code related to Neuroimaging Analysis Replication and Prediction Study
vishnubashyam/DeepBrainNet
Convolutional Neural Network trained for age prediction using a large (n=11,729) set of MRI scans from a highly diversified cohort spanning different studies, scanners, ages, ethnicities and geographic locations around the world.
lindenmp/rs-fMRI
Code for processing and analysis of resting state fMRI
nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain