automated concise descriptions
The requirements for automated concise descriptions are outlined online: http://wiki.wormbase.org/index.php/Generation_of_automated_descriptions
The standard operation procedure for the software is itemized online: http://wiki.wormbase.org/index.php/Documentation_for_workflow_and_scripts
The software is available online: https://github.com/WormBase/automated_descriptions
Output can be found here: http://textpresso-dev.caltech.edu/concise_descriptions/
The perl module dependencies are: AcePerl, Carp, DBI, Devel::Graph, Excel::Writer::XLSX, File::Copy, File::Slurp, Graph::Easy, LWP::Simple, LWP::UserAgent, List::MoreUtils, List::Util, OBO::Parser::OBOParser, POSIX, Spreadsheet::XLSX, Switch and Text::CSV
Perl 5.8.x (or higher) and R 3.x are used on Ubuntu and Red Hat Enterprise Linux platforms.
GNU Parallel 20130922 (or higher), https://www.gnu.org/software/parallel/, is required as well.
Enjoy !
R. Kishore and J. Done, California Institute of Technology, 2016