WormBase

The central repository for information on the experimental system C. elegans

Your lab bench

Pinned Repositories

intermine
A powerful open source data warehouse system
Language:Java4 24 00
pseudoace
Modelling the WormBase ACeDB database in datomic.
Language:Clojure4 14 443
scdefg
A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.
Language:Python3 4 21
wbps-expression
Transcriptomic data for WormBase ParaSite
Language:Perl3 5 212
website-classic
The original version of the WormBase website.
Language:Perl4 27 01
website-mobile
Mobile version of the WormBase website
Language:CSS4 15 133
wormbase-architecture
Language:Python4 6 50
wormbase-curation
Scripts and documentation related to WormBase curation efforts
Language:Perl4 18 51
wormbase-pipeline
Wormbase Build Pipeline
Language:Perl22 19 19813
wormbase_rest
This is an API to the datomic database and provides data to catalyst on a per widget basis as well as information for tools like blast.
Language:Clojure9 5 532

WormBase's Repositories

WormBase/wormbase-pipeline
Wormbase Build Pipeline
Language:Perl22 19 19813
WormBase/wormbase_rest
This is an API to the datomic database and provides data to catalyst on a per widget basis as well as information for tools like blast.
Language:Clojure9 5 532
WormBase/wormbase-architecture
Language:Python4 6 50
WormBase/wbps-expression
Transcriptomic data for WormBase ParaSite
Language:Perl3 5 212
WormBase/website-public
WormBase webiste source code public mirror
Language:HTML3 6 011
WormBase/wormcells-viz
Visualization tools for C. elegans single cell RNA sequencing data
Language:JavaScript3 4 600
WormBase/wbtools
Interface to WB curation data, with corpus management and NLP functions
Language:Python2 4 30
WormBase/wormicloud
Interaction data analysis with word clouds
Language:JavaScript2 2 54
WormBase/ACKnowledge
Author Curation to Knowledgebases
Language:JavaScript1 6 3161
WormBase/caltech-curation-services
Modular curation services for Caltech WormBase data
Language:Perl1 6 80
WormBase/names
Names and identifiers service for facilitating collaboration between curation databases
Language:Clojure1 30 1831
WormBase/SObA
Graph Summary of Ontology-based Annotation
Language:Perl1 7 1
WormBase/website-genome-browsers
Language:Perl1 5 60
WormBase/wormmine-bio-sources
Language:Java1 4 0
WormBase/amplify-wb-jbrowse2
An AWS Amplify oriented repo for building WormBase's JBrowse 2
Language:JavaScript0 2 00
WormBase/website-jbrowse-gff
Dockerfile for processing GFF data for JBrowse
Language:Shell0 4 10
WormBase/amplify-wb-jbrowse1
Repo to drive AWS Amplify builds for JBrowse 1
Language:JavaScript
WormBase/amplify-wb-prot-schematic
Repo to drive AWS Amplify builds for the protein browser
Language:JavaScript3 0
WormBase/amplify-wb-protein-schematic
Repo to drive AWS Amplify builds for the protein browser
Language:JavaScript2 0
WormBase/caltech-tools
Misc scripts and forms contributed by WormBase-Caltech.
Language:Perl5 11
WormBase/curation-sentence-classification
Language:Jupyter Notebook3 4
WormBase/db-migration
Datomic build of the ACeDB database on AWS
Language:Python6 261
WormBase/entity-extraction-antibody
Language:Python3 3
WormBase/entity-extraction-email-addresses
Language:Python3 0
WormBase/entity-extraction-expression-cluster
Language:Python3 0
WormBase/entity-extraction-transgene
Language:Python
WormBase/gc-anatomy-function
Graphical curation tool for anatomy function
Language:Python3 1
WormBase/variant-first-pass
Variant First Pass Pipeline
Language:Python6 9
WormBase/wb-search
Language:Clojure7 01
WormBase/website-jbrowse-protein
Dockerfile for building protein schematic
Language:Shell4 0