WormBase/wormcells-viz

Issues

• Tweak packer2019 description

  #61 opened 3 years ago by Munfred
  0

• Add function to select from a predefined list of genes

  #56 opened 3 years ago by valearna
  1

• Add message that a gene is not present in data when user searches for it

  #57 opened 3 years ago by valearna
  5

• Implement option to sort histogram by average expression level

  #54 opened 3 years ago by valearna
  4

• Add option to select cell types in histograms

  #49 opened 3 years ago by valearna
  3

• Add dockerfile for easier deployment

  #53 opened 3 years ago by valearna
  1

• Add mention that shift or ctrl can be used to select many genes

  #55 opened 3 years ago by valearna
  1

• remove case sensitivity from swarm plot gene highlight and add cell search component in heatmap

  #52 opened 3 years ago by valearna
  1

• Add short note about expression frequency, to go on home

  #59 opened 3 years ago by valearna
  1

• For histogram, add a label saying unit is expression frequency

  #58 opened 3 years ago by valearna
  1

• Allow downloading images with specific dimensions (length, width) and dpi.

  #51 opened 3 years ago by valearna
  2

• Swarm plot: Add label to X axis saying "log2 fold change"

  #60 opened 3 years ago by valearna
  0

• NEW IDEA: add bar plots for p-value and expression level on the margins

  #50 opened 3 years ago by valearna
  0

• Adding gene not in the dataset brakes the app

  #48 opened 3 years ago by valearna
  0

• Add options to export images in several formats and sizes

  #47 opened 3 years ago by valearna
  0

• Unify datasets into a single web app

  #46 opened 3 years ago by valearna
  0

• check filter to remove selected cell from swarmplot

  #45 opened 3 years ago by valearna
  0

• Modify tooltips in swarmplots

  #44 opened 3 years ago by valearna
  0

• Color swarmplot dots based on main cell expression level

  #43 opened 3 years ago by valearna
  0

• Deploy womrcells-viz on AWS

  #31 opened 3 years ago by valearna
  3

• add MIT license

  #42 opened 3 years ago by Munfred
  1

• Place home cards side by side and align text to the left in all cards

  #39 opened 3 years ago by valearna
  0

• Dynamically set xdomain in swarmplot to avoid data overflow

  #41 opened 3 years ago by valearna
  0

• Add custom test in home page to describe dataset taken from config file

  #38 opened 3 years ago by valearna
  0

• put home page text in boxes or cards with margins

  #37 opened 3 years ago by valearna
  0

• Add space between histograms

  #40 opened 3 years ago by valearna
  0

• EDUARDO: Write description overview for landing page explaining each visualization

  #18 opened 3 years ago by Munfred
  2

• Sort cells in histograms alphabetically

  #34 opened 3 years ago by valearna
  0

• Make sure that the reference line is always in the middle of the swarmplot

  #35 opened 3 years ago by valearna
  0

• Explain that the color on the ridge plots is not conveying information

  #26 opened 3 years ago by valearna
  0

• sort genes in swarmplot by p-value, fold change, and expression - both asc desc

  #29 opened 3 years ago by valearna
  0

• Add mouseover tooltip to histograms

  #33 opened 3 years ago by valearna
  0

• Add labels to the histograms with total number of cells

  #32 opened 3 years ago by valearna
  0

• Make the gene/cells label font on heatmap a bit bigger

  #24 opened 3 years ago by valearna
  2

• For the swarmplots: have a text box for pasting gene names to be included in plot and highlighted in another color (eg housekeeping genes or known markers that people would want to compare against)

  #27 opened 3 years ago by valearna
  3

• Perhaps make the save image button more conspicuous

  #25 opened 3 years ago by valearna
  1

• Add colorbar legend to to heatmap and dotplot

  #23 opened 3 years ago by valearna
  1

• Load new files in the API

  #28 opened 3 years ago by valearna
  1

• make ridgeplots histograms instead of areas

  #30 opened 3 years ago by valearna
  7

• Limit ridgeplot areas to domain

  #22 opened 3 years ago by valearna
  1

• FEATURE: Add download button to plots

  #17 opened 3 years ago by Munfred
  0

• Dynamically change heatmap and dotplot height based on number of cells selected

  #21 opened 3 years ago by valearna
  0

• FEATURE: Checkbox selection for cell types on heatmap with clear/select all button

  #16 opened 3 years ago by Munfred
  0

• FEATURE: Make gene box expandable, increase default height to 25 genes

  #15 opened 3 years ago by Munfred
  1

• FEATURE: clear all button for heatmap gene selection

  #14 opened 3 years ago by Munfred
  0

• delete genes from select with del key

  #19 opened 3 years ago by valearna
  0

• BUG: Heatmap only selecting/deselecting one gene at a time

  #13 opened 3 years ago by Munfred
  0

• Change "select genes and cells" accordion to tabs

  #20 opened 3 years ago by valearna
  1

• Add autocomplete to gene selection in ridgeplot

  #11 opened 3 years ago by valearna
  0

• Restrict list of genes returned by the autocomplete to the set in the matrix

  #12 opened 3 years ago by valearna
  0