Munfred

Assistant Professor of Computational Biology at MBZUAI

CaltechPasadena, CA

Pinned Repositories

genesimulator
Python scripts for an easy to use, modular and customizable gene simulator using the Gillespie algorithm.
Language:Python20
pachterlab.github.io
pachterlab.github.io
Language:HTML10
scdefg
A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.
Language:Python1 2 111
seqdepth
Code and notebooks for seqdepth project
Language:Jupyter Notebook00
wormcells-data
Gene expression on C. elegans single cells
Language:HTML2 2 10
poseidon
poseidon system - open source syringe pumps and microscope for laboratories
Language:Jupyter Notebook171 22 2754
SBP_2019
Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscript
Language:Jupyter Notebook15 6 01
single-cell-studies
Example analysis using the 'Single cell studies database'
Language:Jupyter Notebook8 4 02
scdefg
A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.
Language:Python3 4 21
wormcells-viz
Visualization tools for C. elegans single cell RNA sequencing data
Language:JavaScript3 4 600

Munfred's Repositories

Munfred/scdefg
A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.
Language:Python1 2 111
Munfred/awake-template
Language:Vue
Munfred/beltrame
Beltrame group lab website
Munfred/Blog
Language:Jupyter Notebook0 0
Munfred/compassos
compassos.org
Language:HTML
Munfred/derp-news
Language:JavaScript
Munfred/derpnews-site
Language:Vue2 0
Munfred/equipe.podecrer.org
Site de organização da equipe do Pode Crer
Language:HTML
Munfred/flavorlytech
flavorlytech website
Language:HTML
Munfred/foo
foo faa
2 0
Munfred/gcaltech.com
Daily emails with events from the Caltech master calendar with links to add them to Google calendar
Language:CSS
Munfred/group
A beautiful, simple, clean, and responsive Jekyll theme for academics
Language:JavaScript
Munfred/jambudrinks.com
jambudrinks.com
Munfred/kallisto
Near-optimal RNA-Seq quantification
Language:C
Munfred/lab
Academic lab
Language:HTML
Munfred/livrosachados
livrosachados
Language:HTML
Munfred/munfred.github.io
munfred.github.io
Language:JavaScript
Munfred/podecrerexperience
Website for Pode Crer experience classes
Language:HTML1 0
Munfred/potatosite
test potato website for netlify
Language:HTML
Munfred/scbb
Single Cell Biology and Bioinformatics
Munfred/scbc
Attemmpts at making a single cell transcriptomic clock - age regression on scRNA-seq blood samples
Language:Jupyter Notebook
Munfred/scvi-tools-site
Munfred/sovblog
Language:Vue1 0
Munfred/sovclub-site
Language:Vue
Munfred/sovereignty-club
Sovereignty Club website
Language:EJS
Munfred/sovereignty.club
https://sovereignty.club
2 0
Munfred/vilsongroh
Material in English for the Vilson Groh Institute
2 0
Munfred/vilsongroh.org
English material for the Vilson Groh Institute
Language:HTML2 2
Munfred/worm-markers
Language:Jupyter Notebook2 0
Munfred/wot
Fiddling with Waddington OT data