Pinned Repositories
intermine
A powerful open source data warehouse system
pseudoace
Modelling the WormBase ACeDB database in datomic.
scdefg
A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.
wbps-expression
Transcriptomic data for WormBase ParaSite
website-classic
The original version of the WormBase website.
website-mobile
Mobile version of the WormBase website
wormbase-architecture
wormbase-curation
Scripts and documentation related to WormBase curation efforts
wormbase-pipeline
Wormbase Build Pipeline
wormbase_rest
This is an API to the datomic database and provides data to catalyst on a per widget basis as well as information for tools like blast.
WormBase's Repositories
WormBase/dev-config
Developer configuration files for WormBase devs
WormBase/automated_descriptions
automated concise descriptions
WormBase/caltech-curation
WormBase/acetyl
ACeDB clojure library - parsing and dumping .ace formatted files
WormBase/db-prototypes
Prototypes for the database migration project at WormBase.
WormBase/automated_descriptions_variations
WormBase/website-mobile
Mobile version of the WormBase website
WormBase/namedb
The namedb server.
WormBase/website-datomic
WormBase/cookbooks-db-migration
WormBase/textpresso
Repository for TextPressoCentral
WormBase/Literature-Annotation-Tool
WormBase/ace2couch
Moving from AceDB to CouchDB
WormBase/AceCouch
AcePerl API for AceDB data store in CouchDB
WormBase/website-classic
The original version of the WormBase website.
WormBase/website-intermine-master-DEPRECATED
Master configuration and model files for Intermine at WormBase
WormBase/website-gbrowse2-support
Configuration and miscellaneous support files for our GBrowse2 installation
WormBase/website-intermine-sources-DEPRECATED
The Intermine instance at WormBase
WormBase/mimosa
Miniature Model Organism Sequence Aligner
WormBase/AcePerl
Ace.pm - Perl interface to ACEDB databases
WormBase/GBrowse
the Generic Genome Browser
WormBase/website-biomart
The BioMart instance at WormBase
WormBase/ky-projects
Karen's GSA and curation scripts