WormBase/wormbase-pipeline

Issues

• ?GO_annotation model change for WS296

  #271 opened 16 days ago by vanaukenk
  1

• C. briggsae operons

  #255 opened 2 years ago by MagdalenaZZ
  6

• QC for Laboratory class

  #249 opened 2 years ago by MagdalenaZZ
  2

• Xenbase data

  #254 opened 2 years ago by MagdalenaZZ
  1

• GFF generation for C. nigoni

  #258 opened 2 years ago by sdiamantakis
  1

• the "WormBase" trackhub at UCSC genome browser is broken

  #250 opened 2 years ago by MagdalenaZZ
  2

• WS287 model change disease

  #251 opened 2 years ago by MagdalenaZZ
  0

• WS287 add a field for Alliance identifier to the Disease_model_annotation class

  #247 opened 2 years ago by MagdalenaZZ
  1

• Strains in Laboratory

  #246 opened 2 years ago by MagdalenaZZ
  3

• WS287 model databases better

  #248 opened 2 years ago by MagdalenaZZ
  0

• WS285 data missing for Affymetrix chip GPL19230

  #238 opened 3 years ago by MagdalenaZZ
  8

• WS282 Issue 6: number of objects dropped in tier3_stubs.ace

  #198 opened 3 years ago by MagdalenaZZ
  0

• Patch Build Pros/Cons - WB Core species.

  #214 opened 3 years ago by Paul-Davis
  1

• WS285 issue 6: run_build_test.pl BLAST checks don't work for tier2 species

  #235 opened 3 years ago by markquintontulloch
  1

• WS285 issue 8: autoace_builder.pl -gene_span could not find brugia GFF

  #236 opened 3 years ago by markquintontulloch
  1

• WS285 issue 10: RNASeq_expression_levels_brugia.ace missing lifestage for one analysis

  #237 opened 3 years ago by markquintontulloch
  1

• anatomy_ontology.obo file creation_date field is wrong

  #233 opened 3 years ago by sdiamantakis
  1

• WS283 Bonus issue: GAF file testing

  #205 opened 3 years ago by MagdalenaZZ
  5

• BLAST metadata file

  #231 opened 3 years ago by MagdalenaZZ
  7

• Production overview

  #215 opened 3 years ago by Paul-Davis
  0

• Ampersand in the XML files

  #182 opened 3 years ago by MagdalenaZZ
  1

• WS282 Issue 3 blastx and blastp run_build_tests fail

  #197 opened 3 years ago by MagdalenaZZ
  1

• WS285 New Species from CalTech (Kimberly)

  #229 opened 3 years ago by Paul-Davis
  1

• WS284 Issue 8 ENA submission file is not preserved after uploading

  #225 opened 3 years ago by MagdalenaZZ
  1

• Two new “Association types” for Ranjana

  #223 opened 3 years ago by MagdalenaZZ
  1

• WS285 remove tags from Expression class model

  #224 opened 3 years ago by Paul-Davis
  1

• WS285 Expression cluster tag addition - Single_Cell_RNASeq

  #222 opened 3 years ago by Paul-Davis
  3

• WS285 Models make sure to update the WS release version at the bottom of the file

  #216 opened 3 years ago by Paul-Davis
  0

• WS284 - Issue 7

  #221 opened 3 years ago by markquintontulloch
  1

• Datomic Migration on Codon

  #210 opened 3 years ago by Paul-Davis
  5

• EMBLsubmit.pl - Net:FTPSSL error

  #213 opened 3 years ago by Paul-Davis
  1

• EMBL-dump codon test very odd results

  #212 opened 3 years ago by Paul-Davis
  3

• WS283 Issue 7: circRNA count fails in data_checks.pl.WS283.8977

  #206 opened 3 years ago by MagdalenaZZ
  4

• check dbcomp.pl -pre_rel -mail_paulsternberg

  #189 opened 3 years ago by sdiamantakis
  1

• WS283 Issue 4: check logic of $CVS_DIR/track_protein_history.pl. Output results/errors of the check only on stdout

  #204 opened 3 years ago by MagdalenaZZ
  1

• WS283 Issue 9: write_DB_remark.pl.WS283.24382 error

  #207 opened 3 years ago by MagdalenaZZ
  2

• Re-connect with Shohei and NBRP

  #191 opened 3 years ago by MagdalenaZZ
  9

• WS282 Issue 10 : Future FTP change Noah → Codon part 1

  #200 opened 3 years ago by MagdalenaZZ
  3

• WS282 Issue 10 : Future FTP change Noah → Codon part 2

  #199 opened 3 years ago by MagdalenaZZ
  2

• geneace Nightly sync with CalTech

  #202 opened 3 years ago by Paul-Davis
  1

• Syncing data with VEP

  #192 opened 3 years ago by MagdalenaZZ
  5

• WS283 remove old #molecular_change tags which were replaced with VEP.

  #188 opened 3 years ago by Paul-Davis
  0

• Addition to GO_annotation model

  #186 opened 3 years ago by vanaukenk
  2

• Antibody tag removal WS283

  #195 opened 3 years ago by Paul-Davis
  0

• Double mutation lines in gff file

  #190 opened 3 years ago by MagdalenaZZ
  2

• WS281 Issue 9: wormpep666 is considered in production

  #178 opened 3 years ago by MagdalenaZZ
  2

• WS281 Issue 5: BLAST update External Databases

  #176 opened 3 years ago by MagdalenaZZ
  1

• WS281 Issue 7: ENA Manual upload should not be the default

  #177 opened 3 years ago by MagdalenaZZ
  1

• WS281 Issue 12: database names have to be lower-case

  #179 opened 3 years ago by MagdalenaZZ
  1

• WS281 Issue 16: RNASeq_align.pl action restart command

  #180 opened 3 years ago by MagdalenaZZ
  1