WormBase/wormbase-pipeline

WS282 Issue 10 : Future FTP change Noah → Codon part 1

Closed this issue · 3 comments

MagdalenaZZ commented

The FTP site on Noah will no longer be updated, so we need to make sure we write to a space on Ace, and then copy the FTP directory over to the correct space on CODON.

  1. Make the build script write FTP folder to a different location (set up by Mark).
  2. Then update the build guide with the new instructions, including commands for copy-to-codon staging area etc.
markquintontulloch commented

New location: /nfs/panda/ensemblgenomes/wormbase/ftp_staging_tmp

markquintontulloch commented

Example command for copying files to codon (executed from codon):
bsub -n 4 -q datamover "/hps/software/copytools/msrsync/msrsync -p 8 /nfs/ebi/production/panda/ensemblgenomes/wormbase/ftp_staging_tmp /nfs/ftp/pub/databases/wormbase/releases/.WS283/"

MagdalenaZZ commented

Successfully done