Xinglab

Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia and University of Pennsylvania

Pinned Repositories

CLAM
CLIP-seq Analysis of Multi-mapped reads
Language:Python26 11 186
DARTS
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
Language:Python106 12 1930
espresso
Language:Python46 10 414
IRIS
IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
Language:Python21 7 138
lr2rmats
Long read to rMATS
Language:C26 7 126
rMATS-DVR
Language:Python18 8 313
rMATS-long
Language:Python18 5 22
rmats-turbo
Language:C++204 16 34048
rmats2sashimiplot
Language:Python124 10 10453
TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Language:C18 6 192

Xinglab's Repositories

Xinglab/rmats-turbo
Language:C++204 16 34048
Xinglab/rmats2sashimiplot
Language:Python124 10 10453
Xinglab/DARTS
Deep-learning Augmented RNA-seq analysis of Transcript Splicing
Language:Python106 12 1930
Xinglab/espresso
Language:Python46 10 414
Xinglab/CLAM
CLIP-seq Analysis of Multi-mapped reads
Language:Python26 11 186
Xinglab/lr2rmats
Long read to rMATS
Language:C26 7 126
Xinglab/IRIS
IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
Language:Python21 7 138
Xinglab/PEGASAS
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Language:Python18 4 611
Xinglab/rMATS-DVR
Language:Python18 8 313
Xinglab/rMATS-long
Language:Python18 5 22
Xinglab/TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
Language:C18 6 192
Xinglab/abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Language:C12 8 13
Xinglab/GTEx-brain-sQTL
Language:R12 7 05
Xinglab/SEASTAR
SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
Language:Python12 7 35
Xinglab/Myc-regulated_AS_PrCa_paper
Scripts for plotting figures and running analysis throughout the manuscript
Language:R11 3 04
Xinglab/PAIRADISE
Paired Replicate Analysis of Allelic Differential Splicing Events
Language:Python11 7 94
Xinglab/isoCirc
isoCirc
Language:Python10 5 114
Xinglab/TEQUILA-seq
The scripts contained in this repository were used for processing, analyzing, and visualizing TEQUILA-seq data.
Language:Python8 6 10
Xinglab/GLiMMPS
GLiMMPS
Language:R6 7 01
Xinglab/SURVIV
Survival Analysis of mRNA Isoform Variation
Language:Python6 6 17
Xinglab/siri
Language:Python4 8 01
Xinglab/ASPRIN
Language:Python3 5 11
Xinglab/intron-retention-paper
Language:Jupyter Notebook3 8 01
Xinglab/proteoseq
Proteotranscriptome pipeline
Language:Objective-J2 6 21
Xinglab/SQUID
Stringent Quantitation of Unspliced Intron by Deep-sequencing
Language:Python2 6 12
Xinglab/iDARTS
Predicting splicing effects of human genome variants from sequences
Language:Python1 8 00
Xinglab/rmats-turbo-tutorial
Language:HTML1 7 03
Xinglab/Xinglab.github.io
Language:HTML1 8 00
Xinglab/sparks
Language:R7 0
Xinglab/SPIRIT
Language:Perl6 0