YeoLab/flotilla

Issues

• install of flotilla in window anaconda

  #348 opened 7 years ago by rajitnair
  0

• Bug when installing flotilla

  #347 opened 7 years ago by htnani
  0

• Widgets not working

  #346 opened 8 years ago by fontclos
  1

• Problems with combat

  #345 opened 8 years ago by olgabot
  0

• Integrate with 10x genomics output

  #344 opened 8 years ago by olgabot
  0

• use Holovies for creating panels of interactive figures

  #341 opened 8 years ago by olgabot
  0

• Number of mapped reads gets modified upon study creation?

  #340 opened 9 years ago by olgabot
  0

• Yet another Python3 bug

  #336 opened 9 years ago by olgabot
  1

• Make `plot_feature` more flexible

  #339 opened 9 years ago by olgabot
  0

• Get rid of `expression_thresh`

  #338 opened 9 years ago by olgabot
  0

• Get rid of `.data_original`

  #337 opened 9 years ago by olgabot
  0

• Yet another matrix data format

  #334 opened 9 years ago by olgabot
  0

• Wishbone single celll project

  #333 opened 9 years ago by olgabot
  0

• `plot_gene` to support arbitrary ordering (like psueodotime)

  #332 opened 9 years ago by olgabot
  0

• Add correlation type to `interactive_correlations`

  #293 opened 10 years ago by olgabot
  1

• Interactive: Use `Text` and `Button` widgets instead of deprecated ones

  #291 opened 10 years ago by olgabot
  1

• Add classifier subsets to `metadata` columns

  #288 opened 10 years ago by olgabot
  2

• To do list

  #330 opened 9 years ago by alaindomissy
  0

• Flotilla errors with study.plot_graph()

  #328 opened 9 years ago by LeenMachine
  1

• Flotilla fails with ValueError while executing "plot_pca" command

  #327 opened 9 years ago by shassathe
  8

• Auto-release to PyPI via Travis CI

  #268 opened 10 years ago by olgabot
  2

• Replace `Study` objects with `xray` datasets

  #326 opened 9 years ago by olgabot
  0

• Reinstalled flotilla and get "load_hdf" import error

  #324 opened 9 years ago by shassathe
  2

• Simplify code

  #325 opened 9 years ago by olgabot
  0

• Threshold of expression data uses unlogged threshold

  #323 opened 9 years ago by olgabot
  0

• Error Importing Flotilla

  #321 opened 10 years ago by shassathe
  2

• Correct sandbox call: conda create --name flotilla_env

  #320 opened 10 years ago by DrMZZ
  1

• Allow for any number of expression or splicing datasets on a study

  #319 opened 10 years ago by olgabot
  0

• Cannot setup flotilla on Windows?

  #318 opened 10 years ago by CinchBlue
  1

• abstract out machine learning visualization, metadata-based subsetting, and splicing compute

  #315 opened 10 years ago by olgabot
  0

• make `plot_feature` able to take multiple ids and spit out a panel of gene expression/splicing violinplots

  #314 opened 10 years ago by olgabot
  0

• Unable to download hg19 annotations

  #313 opened 10 years ago by hjeanc
  3

• Can't embark on study name only

  #307 opened 10 years ago by olgabot
  0

• tidy_splicing_with_expression should deal with splicing events mapping to multiple gene ids

  #304 opened 10 years ago by olgabot
  0

• NMF space plot axis labels are wrong

  #300 opened 10 years ago by olgabot
  0

• PCA heatmap doesn't scale to few features

  #298 opened 10 years ago by olgabot
  0

• For ordered sample subsets, be able to take any flexible range

  #287 opened 10 years ago by olgabot
  1

• upgrade `BaseData`, `ClassifierBase`, etc to Python's `abc` AbstractBaseClass

  #269 opened 10 years ago by olgabot
  0

• Establish common interactive features

  #279 opened 10 years ago by olgabot
  0

• Plot contributions of features to components as a heatmap

  #270 opened 10 years ago by olgabot
  0

• Remove NAs from sample subsets

  #281 opened 10 years ago by olgabot
  0

• Auto-create tab-complete-able sample subsets from metadata

  #284 opened 10 years ago by olgabot
  1

• In interactive_*, add option to mix sample and feature subsets

  #286 opened 10 years ago by olgabot
  0

• Add color legend to clustermap

  #292 opened 10 years ago by olgabot
  0

• Add "show_vectors" and all other pca options to study.plot_pca

  #283 opened 10 years ago by olgabot
  0

• Set default number of components in DataFrameReducerBase

  #280 opened 10 years ago by olgabot
  0

• Boolean feature subsets don't work

  #289 opened 10 years ago by olgabot
  1

• Abstract out biology-specific parts

  #294 opened 10 years ago by olgabot
  0

• Check that metadata, expressiondata, splicingdata, etc... have matching sample ids

  #265 opened 10 years ago by olgabot
  0

• Add ability to plot any feature of any type vs any feature of any type

  #264 opened 10 years ago by olgabot
  0