YingChen94
Biology PhD Candidate at Queen's University in Canada; Genome assembly and annotation; Phylogenomics; Conservation genomics
Pinned Repositories
syntenet
An R package to infer and analyze synteny networks from protein sequences
physlr
:chains: Construct a Physical Map from Linked Reads
BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
pairtools
Extract 3D contacts (.pairs) from sequencing alignments
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
BnR_Hayden_Ying_R_Session
This is a repository for online R tutorials organized by Lougheed Lab at Queen's University in 2020.
Ptriseriata_genome
YingChen94.github.io
Ying Chen's Homepage
YingChen94's Repositories
YingChen94/Ptriseriata_genome
YingChen94/BnR_Hayden_Ying_R_Session
This is a repository for online R tutorials organized by Lougheed Lab at Queen's University in 2020.
YingChen94/YingChen94.github.io
Ying Chen's Homepage