Error with memory
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jgarces02 commented
Hi @YosefLab team,
I'm trying to apply scone for a single-cell analysis but RStudio promps the following message... I don't understand it because I'm not using so much cells (my matrix dimensions are 606 cells and 13000 genes) and my PC has 32 GB of RAM.
Error: cannot allocate vector of size 56.2 Mb
In addition: Warning message:
In .local(x, ...) :
none_uq returned at least one NA value. Consider removing it from the comparison.
In the meantime, failed methods have been filtered from the output.
And this is the code:
df_scone <- scone(df_scone, scaling = scaling, run = T, zero = "postadjust", return_norm = "in_memory",
eval_kclust = 2:8, stratified_pam = T, k_qc = 0, k_ruv = 3,
adjust_bio = "no", adjust_batch = "force")
Any idea, please? Thanks in advance!