SconeExperiment for signature matrix should accept character vectors for poscon and negcon
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drisso commented
Something like this should work, but doesn't because it requires poscon
, negcon_ruv
and neocon_eval
to be logical vectors.
poscon <- c("gene1", "gene2", "gene3")
scone_obj <- SconeExperiment(filtered, qc=qc, batch=batch,
poscon = poscon)