Warning when using default zero option
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drisso commented
Because the default value of zero in scone is zero = c("none", "preadjust", "postadjust", "strong"), the following line throws a warning:
https://github.com/YosefLab/scone/blob/master/R/scone_main.R#L177
the condition has length > 1 and only the first element will be used
Adding the following line before L177 should fix it.
zero <- match.arg(zero)