reproducibility of GSEA
Closed this issue · 1 comments
vladpetyuk commented
GSEA relies on random permutations. At the same time the function that implements GSEA uses mclapply
for multithreaded computation. There is a need to make sure that permutations can be reproducible regardless the number of threads and OS. A related StackOverflow question along with a solution.
GuangchuangYu commented
thanks for the pull.