Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

Guangzhou

Pinned Repositories

ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
Language:R234 19 19277
clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
Language:R1.1k 44 669259
DOSE
:mask: Disease Ontology Semantic and Enrichment analysis
Language:R119 10 5036
enrichplot
Visualization of Functional Enrichment Result
Language:R241 11 23170
ggbreak
:broken_heart: An implementation of scale functions for setting axis breaks of a 'gg' plot.
Language:R138 6 565
ggmsa
:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2
Language:R210 5 6324
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
Language:R870 37 511177
MicrobiotaProcess
:microbe: A comprehensive R package for deep mining microbiome
Language:R184 7 12537
plotbb
:paintbrush: Grammar of Graphics for base plot
Language:R52 5 27
SVP
Language:R9 4 20

Bioinformatics Group @ SMU's Repositories

YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
Language:R1.1k 44 669259
YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result
Language:R241 11 23170
YuLab-SMU/ChIPseeker
:dart: ChIP peak Annotation, Comparison and Visualization
Language:R234 19 19277
YuLab-SMU/ggmsa
:traffic_light: Visualizing publication-quality multiple sequence alignment using ggplot2
Language:R210 5 6324
YuLab-SMU/MicrobiotaProcess
:microbe: A comprehensive R package for deep mining microbiome
Language:R184 7 12537
YuLab-SMU/ggbreak
:broken_heart: An implementation of scale functions for setting axis breaks of a 'gg' plot.
Language:R138 6 565
YuLab-SMU/aplot
Decorate a plot with associated information
Language:R103 6 2816
YuLab-SMU/treeio
:seedling: Base Classes and Functions for Phylogenetic Tree Input and Output
Language:R102 13 5626
YuLab-SMU/ggtreeExtra
:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
Language:R91 4 3315
YuLab-SMU/GOSemSim
:golf: GO-terms Semantic Similarity Measures
Language:R63 6 3726
YuLab-SMU/scatterpie
:art: scatter pie plot
Language:R62 2 3615
YuLab-SMU/fanyi
Translate Words or Sentences via Online Translators
Language:R52 2 267
YuLab-SMU/ggsc
🧠 Visualizing Single Cell and Spatial Transcriptomics
Language:R47 4 212
YuLab-SMU/ReactomePA
Reactome Pathway Analysis
Language:R40 8 3610
YuLab-SMU/MicrobiomeProfiler
:microbe: A shiny package for microbiome functional enrichment analysis
Language:R38 3 38
YuLab-SMU/yulab.utils
Miscellaneous functions commonly used by 'YuLab-SMU'.
Language:R33 4 210
YuLab-SMU/seqcombo
Visualization tool for genetic reassortment
Language:R21 3 27
YuLab-SMU/ggfun
useful functions for ggplot
Language:R18 4 34
YuLab-SMU/ggtreeDendro
Drawing 'dendrogram' using 'ggtree'
Language:R13 2 03
YuLab-SMU/meshes
:stethoscope: MeSH Enrichment and Semantic analyses
Language:R12 4 44
YuLab-SMU/yulab-smu.github.io
:house: Homepage for YuLab-SMU
Language:HTML12 2 15
YuLab-SMU/SVP
Language:R9 4 20
YuLab-SMU/aplotExtra
Creating composite plot using 'aplot'
Language:R8 2 05
YuLab-SMU/ggtangle
Draw Network with Data
Language:R7 2 1
YuLab-SMU/ggtreeSpace
🕸️Exploring phylomorphospace using 'ggtree'
Language:R5 2 12
YuLab-SMU/sclet
A Lightweight Toolkit for Single-Cell Data Analysis
Language:R4 1 17
YuLab-SMU/Pharmacology-Resource
1 1 01
YuLab-SMU/.github
2 0
YuLab-SMU/scsaur
1 0
YuLab-SMU/Supplemental_ggtree_placement
Supplementary code and data
Language:R3 02