Issues
- 0
Upsetplot is cropped
#696 opened by nina-hahn - 1
- 1
gseKEGG using KEGG database error (cannot open URL 'https://rest.kegg.jp/conv/ncbi=geneid/mmu': HTTP status was '400 Bad Request')
#694 opened by ChoIYS98 - 21
GSEA long time no response
#659 opened by Xingsongli - 0
Perform gseaplot2 using seurat DEG output.
#693 opened by synatkeamsk - 0
- 4
gson 格式在最新版 enrichKEGG中出错
#685 opened by Shuixin-Li - 1
compareCluster - Error in check_gene_id - but work perfectly with standar procedure (not using compareCluster)
#691 opened by philousap - 1
bitr报错
#682 opened by wangtanzhang612 - 2
- 1
All p-values are equal to 1
#690 opened by MyBiscuit - 2
How to convert geneID from the enrichKEGG output from entrez to gene symbol?
#688 opened by thisisamirv - 2
enrichKEGG "No gene can be mapped"
#689 opened by dengzf2021 - 1
ont = "BP" in enricher () function
#686 opened by enriquepola1996 - 1
No gene can be mapped
#645 opened by clydeghost - 1
OrgDb for maize
#687 opened by enriquepola1996 - 6
something wrong of setReadable
#683 opened by williambi1 - 3
feature request: add message suggesting to cite fgsea package when it's used for GSEA analysis
#680 opened by assaron - 1
Error in testForValidKeytype(x, keytype) : Invalid keytype: GOALL. Please use the keytypes method to see a listing of valid arguments.
#684 opened by lifannn11 - 0
Count duplicate K Numbers (KEGG) for enrichKEGG?
#681 opened by diefuechsin - 1
How to combine different compareCluster results?
#678 opened by Kyeongmi-Lee - 1
heatplot function; color scale is switched
#676 opened by zellerivo - 1
How to split the results of compareCluster?
#677 opened by Ldec12 - 1
compareCluster's enrichGO difference in results when stating ont = "ALL" vs NULL
#675 opened by jestlin15 - 2
- 2
How to generate gseaplots from the result of compareCluster gseaGO or gseaKEGG functions?
#673 opened by JiahuaQu - 4
- 4
problem in run compareCluster
#669 opened by gongxin8888 - 2
Dotplot() cannot change color
#663 opened by GuanKX99 - 4
- 3
Not able to install clusterProfiler on Colab
#665 opened by pmhchang - 1
Trouble with gseKEGG on mac sonoma 14.2
#666 opened by annecar - 6
gseKEGG()函数运行时出错
#652 opened by ZhanshenWu - 2
Cannot library(clusterProfiler)
#660 opened by HLinChen - 0
Unable to load clusterProfiler (4.11.0.00) - object ‘ls2df’ not exported by 'namespace:yulab.utils'`
#661 opened by zoezhao1030 - 4
- 0
When there's only one term ID in the dataframe passed as TERM2GENE in enricher
#657 opened by mansi-aggarwal-2504 - 2
clusterProfiler custom annotated list
#655 opened by mansi-aggarwal-2504 - 0
compareCluster does not give a warning/message that numeric universe is ignored for fun = "enrichGO"
#654 opened by IwanParf - 5
- 4
- 0
- 8
enrichKegg Bug
#646 opened by zellerivo - 1
Change Font Size of Dot Plot's Features
#647 opened by jennymaga - 2
Error in download.file(url, quiet = quiet, method = "libcurl"), libcurl cannot be change
#648 opened by Junyan1996 - 1
- 1
Unable to install
#642 opened by imrank11 - 1
- 1
Package installation pause of clusterProfiler
#640 opened by ShixiangWang - 1
dotplot() error after compareCluster() for fun = "groupGO" with data(gcSample)
#639 opened by sunta3iouxos