YuLab-SMU/ggmsa

Issues

• Protein secondary structure & domain annotation

  #47 opened 2 years ago by gezmi
  6

• Adding amino acid annotations

  #70 opened 4 months ago by TKMarkCheng
  0

• Note: wrong number of arguments to 'seq_len'

  #35 opened 3 years ago by ramiromagno
  2

• ggmsa plot error due to unique names

  #25 opened 3 years ago by akjrobijns
  4

• Disagreement, Custom Colors, DNA

  #69 opened 5 months ago by Elliott77
  0

• Legend is not showing with show.legend = T

  #68 opened 7 months ago by davidkim8
  0

• Add overlay for Domains and other annotations

  #67 opened 7 months ago by docmanny
  0

• ggmsa函数可能需要一个选择比对序列类型的参数

  #66 opened 8 months ago by CGsTree
  0

• CRAN

  #65 opened 10 months ago by KlausVigo
  1

• ggmsa rlang error

  #64 opened 10 months ago by alslonik
  0

• Plotting alignment in wide format

  #56 opened 2 years ago by vhfsantos
  1

• Consensus Sequence Threshold?

  #63 opened a year ago by ruirachao
  0

• Stop codon

  #51 opened a year ago by Close-your-eyes
  1

• Basic question: how to upload MSA into R to use with ggmsa

  #62 opened a year ago by Franz4272
  1

• Text overlapping.

  #48 opened 2 years ago by art-egorov
  2

• Support alignments from `msa` package

  #61 opened a year ago by mschubert
  0

• How to shift to display the conservative region, and separates the mismatched regions？

  #60 opened a year ago by shitiezhu
  0

• Seq names are not shown

  #59 opened a year ago by Dobrokhotov1989
  0

• Re-list ggmsa on CRAN

  #58 opened a year ago by ababaian
  3

• adjusting geom_msabar()

  #57 opened 2 years ago by omarkr8
  0

• boxshade color

  #55 opened 2 years ago by groponp
  0

• cannot read fasta alignment file

  #45 opened 2 years ago by wowfee
  1

• Error in parse(text = elt) : <text>:1:7: unexpected symbol

  #53 opened 2 years ago by mmotoc
  2

• custom color with consensus_views

  #54 opened 2 years ago by csgenomics-admin
  0

• ggmsa is very slow cause of a very big pdf?

  #52 opened 2 years ago by trilisser
  0

• non-numeric argument to binary operator

  #49 opened 2 years ago by xuzhougeng
  1

• question about save to image

  #46 opened 2 years ago by orangeSi
  4

• Creat FASTA files from APE files

  #43 opened 2 years ago by chrismahony
  1

• The ggmsa::ggSeqBundle() of arg:line_widch should be line_width?

  #44 opened 2 years ago by zhipengliux
  0

• Is there a way to only highlight/colour unconserved regions?

  #42 opened 2 years ago by cms72
  2

• How to install ggmsa under R 3.6

  #33 opened 3 years ago by binlu1981
  3

• how to add a group of point in to ggmsa

  #41 opened 3 years ago by loverlyday
  1

• new problem in the GGMsa

  #40 opened 3 years ago by fishboyID
  3

• Font in alignments is pixelated

  #37 opened 3 years ago by ramiromagno
  3

• Commented out examples in documentation of `ggmsa()`?

  #39 opened 3 years ago by ramiromagno
  6

• Can't use `ggplot2::coord_flip()` with ggmsa plots?

  #38 opened 3 years ago by ramiromagno
  2

• Error in if (freq1 > 0.9 && freq2 > 0) {: missing value where TRUE/FALSE needed

  #36 opened 3 years ago by ramiromagno
  1

• geom_msaBar conservation layer incorrectly aligned

  #34 opened 3 years ago by tgstoecker
  2

• Required R version too new

  #31 opened 3 years ago by iferres
  1

• Add a 'None' option for color

  #32 opened 3 years ago by cmatKhan
  3

• Spelling of the ggmsa argument "posHighligthed"

  #29 opened 3 years ago by takosa
  1

• Geom_Logo masks the first line of sequence alignment

  #28 opened 3 years ago by nunder
  5

• Problems with tree, MSA and logo

  #27 opened 3 years ago by nunder
  2

• Adjusting x axis of facet_msa?

  #26 opened 3 years ago by bickibird
  3

• I can't find Cripavirus.fasta

  #24 opened 3 years ago by aimer-entropy
  2

• Combine ggmsa plot and ggtree?

  #23 opened 3 years ago by Ekie22
  2

• Error with custom color

  #21 opened 3 years ago by atm44
  1

• Annotating a specific facet

  #20 opened 3 years ago by bickibird
  4

• Error in .Call2 with DNAbin

  #19 opened 4 years ago by bbvdhoorn
  3

• Error in if (freq > 0.9) { : missing value where TRUE/FALSE needed

  #18 opened 4 years ago by limin321
  4