Pinned Repositories
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
bactopia
A flexible pipeline for complete analysis of bacterial genomes
MLSTar
An easy way of MLSTyping your genomes in R.
pagoo
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
pewit
Pangenome estimation.
phylen
Compute a phylogeny using EggNOG database
simurg
Simulate pangenomes according to the IMG + Neutral models
porefile
A Nextflow full-length 16S profiling pipeline for ONT reads
iferres's Repositories
iferres/pagoo
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
iferres/MLSTar
An easy way of MLSTyping your genomes in R.
iferres/simurg
Simulate pangenomes according to the IMG + Neutral models
iferres/phylen
Compute a phylogeny using EggNOG database
iferres/pewit
Pangenome estimation.
iferres/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
iferres/bactopia
A flexible pipeline for complete analysis of bacterial genomes
iferres/CSI-nf
iferres/Curso_Metagenomica_IIBCE
Tutoriales para el curso de Metagenómica Funcional CABBIO
iferres/download_map_assembly_nextflow
iferres/GTi_UY_shiny
iferres/iferres.github.io
iferres/migenpipeline
iferres/mirecipe
mirecipe - microbial genomics pipeline
iferres/misc_R_functions
Some R functions / Wrappers / whatever
iferres/NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
iferres/nCOV19SOP-Artic
Nextflow pipeline for ARTIC-nCoV-bioinformaticsSOP-v1.0.0
iferres/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
iferres/pagoo_publication_scripts
Scripts supporting pagoo's publication
iferres/pangenome_benchmark
iferres/pangenome_simulation_figures
Repository for manuscript script and figures
iferres/pangenomeEval_scripts
iferres/pewit_publication_scripts
iferres/pewit_simulation_benchmark
iferres/pharokka
fast phage annotation program
iferres/PIRATE
A toolbox for pangenome analysis and threshold evaluation.
iferres/rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
iferres/Rfunctions
Some R functions for microbial genomics analyses
iferres/Singularity_recipes
Some Singularity definition files
iferres/sregistry-cli
Singularity Global Client for container management