iferres/pagoo

Issues

• Change Shell and Cloud levels

  #65 opened a year ago by alegione
  1

• Is it possible to run panaroo_2_pagoo without removing "refound_"?

  #64 opened a year ago by emilywollmuth
  2

• gene IDs from Panaroo (1.3.2) presence/absence matrix file do not match IDs in GFF files

  #60 opened a year ago by qisun2
  6

• how to add metadata in gene_presence_absence.csv file?

  #62 opened a year ago by neelam19051
  1

• Failing to process gene_presence_absence.csv file

  #63 opened 2 years ago by LovaRandriantseheno
  0

• Reading gffs: Error in (function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, : row names contain missing values

  #61 opened 2 years ago by iferres
  3

• roary_2_pagoo Error: subscript contains invalid names

  #59 opened 2 years ago by jhcuarta
  35

• Failed with error: ‘package ‘S4Vectors’ required by ‘pagoo’ could not be found’

  #56 opened 2 years ago by MauriAndresMU1313
  14

• panaroo to pagoo, support for bakta annos

  #57 opened 2 years ago by herber4
  29

• Is there a function pagoo_2_roary ?

  #58 opened 2 years ago by diaspj
  4

• Cluster annotations do not match cluster names

  #55 opened 3 years ago by eam12
  5

• Remove metadata option

  #54 opened 3 years ago by g1o
  3

• panaroo_2_pagoo error

  #53 opened 3 years ago by hayleyjaywilson
  6

• Bug when `$add_metadata()` with missing key at the end

  #51 opened 3 years ago by iferres
  0

• Add `phylo` object as metadata

  #45 opened 4 years ago by iferres
  5

• Add Willenbrock et al. 2007 coregenome fit function

  #52 opened 3 years ago by iferres
  0

• $add_metadata() should override columns with same name

  #44 opened 4 years ago by iferres
  2

• Improve internal ggplot2 functions handling

  #49 opened 4 years ago by iferres
  0

• load_pangenomeRDS() fails with old third party objects

  #48 opened 4 years ago by iferres
  1

• Implement $drop(hard = TRUE)

  #47 opened 4 years ago by iferres
  1

• Re-assign genes to other clusters

  #46 opened 4 years ago by iferres
  0

• Code coverage - shiny on tests

  #43 opened 4 years ago by iferres
  0