cnetplot for selected gene and GO term
antoine4ucsd opened this issue · 1 comments
antoine4ucsd commented
Hello
First of all, thank you for sharing this impressive package.
I have a question/request regarding the cnetplot function. I would like to use it to plot a'network' of genes associated with specific GO cancer terms or hallmarks.
I am attaching an example of data which include pid, ENTREZID, GO term, Hallmarks
For example, I would like to plot the cnet of all genes by hallmarks or within a given hallmark, all genes and term names
I did some enrichment analyses too but my goal here is just to be descriptive.
Does that make sense?
is there a way to adapt this dataframe to use it as an input for cnetplot?
mydata.csv
thank you in advance!