Pinned Repositories
concaveman-windowsPythonWrapper
C++ port of mapbox's JS concaveman, with updated Python wrapper for windows
D3-Shiny-Sandbox
Work on community detection in random graphs using interactive tools like shiny and D3.
Expression-color-mask-to-expresssion-intensity
Mapping expression color mask of Fluorescence In Situ Hybridization (FISH) image to expresssion intensity
FISH-VIEWER
GUI to download, visualize FISH images from Allen Brain intitute
HekaReader
A Heka .dat file reader in Python3
patchview
python toolkits and GUI for multi-patch whole-cell data analysis and visualization
ZeitgeberH's Repositories
ZeitgeberH/patchview
python toolkits and GUI for multi-patch whole-cell data analysis and visualization
ZeitgeberH/3d_print_designs
ZeitgeberH/cable-bible
A guide to cables and connectors used for audiovisual tech
ZeitgeberH/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
ZeitgeberH/datajoint-python-atlab
Relational data pipelines for the science lab - atlab fork
ZeitgeberH/deepinterpolation
ZeitgeberH/dictdiffer
Dictdiffer is a module that helps you to diff and patch dictionaries.
ZeitgeberH/dj-docs
Documentation of datajoint @ Kavli Institute
ZeitgeberH/DJ-to-nwb
ZeitgeberH/dj_nda
nda schema for Reimer lab's datajoint database
ZeitgeberH/EthoPy
State control system for automated behavioral training
ZeitgeberH/fMRI_ROI_Analysis_Tool_joss_review
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
ZeitgeberH/free-programming-books
ZeitgeberH/jnormcorre
Jax implementation of normcorre
ZeitgeberH/MINI2P_toolbox
The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More details can be found in the original paper "Large-scale two-photon calcium imaging in freely moving mice(2021)".
ZeitgeberH/NEURD
NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
ZeitgeberH/NeuroM
Neuronal Morphology Analysis Tool
ZeitgeberH/Open5x
This is a Github repository for 5-axis 3D printing
ZeitgeberH/pipecontrol
Website for interactions with pipeline.
ZeitgeberH/pipeline
Schemata and libraries for neuroscientific data
ZeitgeberH/PyMouse
Presenting Visual stimulus and Behavioral conditioning with mice
ZeitgeberH/pyqtgraph
Fast data visualization and GUI tools for scientific / engineering applications
ZeitgeberH/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
ZeitgeberH/reimer-arenkiel-lab-to-nwb
Reimer-Arenkiel lab conversion to NWB
ZeitgeberH/scaling-disco
ZeitgeberH/SpectralSegmentation
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
ZeitgeberH/SRDTrans
SRDTrans: Spatial redundancy transformer for self-supervised fluorescence image denoising
ZeitgeberH/wfield
Tools to process widefield data
ZeitgeberH/ZeitgeberH
ZeitgeberH/zotero-research-assistant
Zotero Research Assistant Powered by Large Language Models