ZhangDengwei

ZhangDengwei's Stars

• andymckenzie/DGCA

  Differential Gene Correlation Analysis

  Language:R4610

• biobakery/MMUPHin

  MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

  Language:R84

• yinglia/SurvBal

  An R package used for the selection of microbiome balances in relation to censored survival and time-to-event outcomes

  Language:R3

• ml4bio/Dense-Homolog-Retrieval

  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

  Language:Python902

• MrOlm/drep

  Rapid comparison and dereplication of genomes

  Language:Python26438

• sourmash-bio/sourmash

  Quickly search, compare, and analyze genomic and metagenomic data sets.

  Language:Python47779

• biobakery/maaslin3

  MaAsLin3: Microbiome Multivariate Association with Linear Models

  Language:R151

• taowenmicro/ggClusterNet

  Microbial ecological network visualization clustering

  Language:R10045

• zdk123/SpiecEasi

  Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

  Language:R19668

• zellerlab/siamcat

  R package for Statistical Inference of Associations between Microbial Communities And host phenoType

  Language:R5216

• HCBravoLab/metagenomeSeq

  Statistical analysis for sparse high-throughput sequencing

  Language:R6720

• Sydney-Informatics-Hub/Shotgun-Metagenomics-Analysis

  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more

  Language:Shell267

• YuLab-SMU/MicrobiotaProcess

  :microbe: A comprehensive R package for deep mining microbiome

  Language:R18337

• biobakery/biobakery

  bioBakery tools for meta'omic profiling

  Language:Shell26273

• althonos/pyrodigal

  Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

  Language:Cython1415

• rochoa85/PepFun2

  PepFun 2.0: improved protocols for the analysis of natural and modified peptides

  Language:Python202

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2k501

• gecrooks/weblogo

  WebLogo 3: Sequence Logos redrawn

  Language:Python14838

• omarwagih/ggseqlogo

  Publication-quality sequence logos in R

  Language:R20830

• davidsjoberg/ggsankey

  Make sankey, alluvial and sankey bump plots in ggplot

  Language:R26832

• cran/itol.toolkit

  :exclamation: This is a read-only mirror of the CRAN R package repository. itol.toolkit — Helper Functions for 'Interactive Tree Of Life'

  Language:R6

• YuLab-SMU/ggtree

  :christmas_tree:Visualization and annotation of phylogenetic trees

  Language:R845173

• KwanLab/Autometa

  Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

  Language:Python4015

• BigDataBiology/macrel

  Predict AMPs in (meta)genomes and peptides

  Language:Python699

• tqdm/tqdm

  :zap: A Fast, Extensible Progress Bar for Python and CLI

  Language:Python28.8k1.4k

• motu-tool/fetchMGs.pl

  Language:Perl161

• kassambara/factoextra

  Extract and Visualize the Results of Multivariate Data Analyses

  Language:R359103

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python95074

• wwood/CoverM

  Read coverage calculator for metagenomics

  Language:Rust31131

• biobakery/phylophlan

  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

  Language:Python12833