ZhiweiNiepku

ZhiweiNiepku's Stars

• junxia97/awesome-pretrain-on-molecules

  [IJCAI 2023 survey track]A curated list of resources for chemical pre-trained models

  49051

• ZhiweiNiepku/E2VD

  Language:Jupyter Notebook31

• danny305/StabilityOracle

  Language:Python201

• Kevinatil/GenPreMut

  Official code repository for GenPreMut

  Language:Python2

• SakanaAI/AI-Scientist

  The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

  Language:Jupyter Notebook8k1.1k

• Ablustrund/LoRAMoE

  LoRAMoE: Revolutionizing Mixture of Experts for Maintaining World Knowledge in Language Model Alignment

  Language:Python21714

• evolutionaryscale/esm

  Language:Python1.2k139

• Palzkill-Lab/CTXM_epistasis

  Data processing for Judge et al. CTX-M-14 pairwise epistasis dataset.

  Language:Jupyter Notebook11

• AspirinCode/AlphaPPImd

  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks

  Language:Jupyter Notebook252

• nglviewer/nglview

  Jupyter widget to interactively view molecular structures and trajectories

  Language:Jupyter Notebook820134

• open-webui/open-webui

  User-friendly AI Interface (Supports Ollama, OpenAI API, ...)

  Language:Svelte45k5.5k

• prescient-design/walk-jump

  Official repository for discrete Walk-Jump Sampling (dWJS)

  Language:JavaScript455

• microsoft/JARVIS

  JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf

  Language:Python23.7k2k

• snap-stanford/BioDiscoveryAgent

  BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments

  Language:Python234

• ACE-KAIST/DeepICL

  Official Github for "3D Molecular Generative Framework for Interaction-guided Drug Design" (Nature Communications)

  Language:Python456

• ZhiweiNiepku/S3C

  Language:Python3

• microsoft/Graphormer

  Graphormer is a general-purpose deep learning backbone for molecular modeling.

  Language:Python2.1k336

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook948114

• stau-7001/S3AI

  Language:Python91

• PharMolix/OpenBioMed

  Language:Python69580

• TencentAILabHealthcare/PALM

  Language:Python292

• uw-ipd/RoseTTAFold2NA

  RoseTTAFold2 protein/nucleic acid complex prediction

  Language:Python32973

• ZhiweiNiepku/SARS-CoV-2_mutation_simulation

  Language:Python7

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C806100

• Rocklin-Lab/cdna-display-proteolysis-pipeline

  Language:Jupyter Notebook215

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.7k338

• jianfcpku/SARS-CoV-2-reinfection-DMS

  BA.5-based DMS data analysis code and processed data

  Language:Jupyter Notebook21

• RUCAIBox/LLMSurvey

  The official GitHub page for the survey paper "A Survey of Large Language Models".

  Language:Python10.3k812

• jianfcpku/convergent_RBD_evolution

  Language:Jupyter Notebook75

• neherlab/SARS-CoV-2_variant-reports

  Informal summaries of notable SARS-CoV-2 lineages

  10712