Zhoujy1020

Zhoujy1020's Stars

• Wy2160640/py_scripts

  Some scripts for UCSC

  Language:Python53

• Wanyi-Huang/PCA2normal_format.R

  for converting the PCA analyses out files of gcta and ldak to normal format

  Language:R2

• limix/pandas-plink

  PLINK reader for Python.

  Language:Python7818

• chaoning/REMMA

  2

• thequackdaddy/R-OpenBLAS

  64-bit R for Windows compiled with openblas

  Language:PowerShell158

• ricardo-bion/ggtech

  ggplot2 tech themes, scales, and geoms

  Language:R38863

• conda-forge/scikit-mdr-feedstock

  A conda-smithy repository for scikit-mdr.

  25

• EpistasisLab/scikit-mdr

  A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.

  Language:Python12526

• thomasp85/ggraph

  Grammar of Graph Graphics

  Language:R1.1k112

• briatte/ggnetwork

  Geoms to plot networks with ggplot2

  Language:HTML14628

• Tong-Chen/s-plot

  A simple plot library

  Language:Shell5030

• milospjanic/findLDSNPs

  findLDSNPs is a bash/mySQL/awk script to obtain SNPs that are in linkage disequilibrium (LD) with the input list of SNPs using a user defined R2 or dprime value in user defined window around the SNP location. LD calculation is based on 1000Genomes phase 3 phased genomes.

  Language:Shell2

• abalvarenga/LDanalysis

  Pipeline used to calculate linkage disequilibrium (LD) and data vizualization of LD. That was one of steps used for results of the LD's research in Santa Inês ovine population : https://www.nature.com/articles/s41598-018-27259-7

  1

• keri/visualize_linkage_disequilibrium_data

  Functions to visualise linkage disequilibrium analysis with scatter plots

  Language:Jupyter Notebook1

• cran/mapLD

  Linkage Disequilibrium Mapping

  Language:R1

• stephenslab/ldshrink

  ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium

  Language:C++111

• RuchithaBG/linkage-disequilibrium

  Language:Python1

• deflaux/linkage-disequilibrium

  A suite of Java tools to calculate linkage disequilibrium between variants and load the results into BigQuery and BigTable.

  Language:Jupyter Notebook1

• jontaklee/LinkageDisequilibrium

  Measure linkage disequlibrium between all segregating loci in a cross

  Language:Python1

• BGI-shenzhen/LDBlockShow

  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  Language:Perl13140

• Ming-Lian/Bioinformatics-skills

  生物信息学技能提升，专注于工具使用与编程

  13562

• YuetongXU/CropGBM

  Language:Python246

• ncsumaize/Epistacy

  Ancient SAS code for genetic epistasis search

  Language:SAS1

• wesm/pydata-book

  Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

  Language:Jupyter Notebook21.9k15k

• zhouxd66/zhouxd66

  1

• BrambleXu/statistical-learning-method

  《统计学习方法》笔记-基于Python算法实现

  Language:Jupyter Notebook6428

• iamseancheney/python_for_data_analysis_2nd_chinese_version

  《利用Python进行数据分析·第2版》

  7.7k2.7k

• TheAlgorithms/Python

  All Algorithms implemented in Python

  Language:Python184k44.2k

• wbaopaul/umMDR

  Language:R21

• wbaopaul/Multi-QMDR

  Detect gene-gene interaction/epistasis by using multivariate phenotypes and MDR

  Language:R2