Zuricho
Using AlphaFold and protein language model to solve protein engineerning, evolution, design challenges
Chinese University of Hong KongShenzhen
Pinned Repositories
A501-3DAC-AlphaFold
Here is the repository for scripts that utilized to achieve the results and figures in the manuscript entitled "Proteome-wide 3D structure prediction provides new insights into the ancestral metabolism of ancient archaea and bacteria"
alphafold3_facts
Collection of trials, discussions, and tricks of AlphaFold3.
AlphaFold3_Result_Visualize
A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
Alphafold_local
My guide to install Alphafold locally
chroma_pipeline
Protein design pipeline for using Chroma, a protein structure generation model, for various tasks
FoldCraft
Work in progress
ParaFold_dev
ParaFold - under development
ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
ProteinDesignLabs
List of computational protein design research labs
zurtein
A python package for protein sequence and structure analysis
Zuricho's Repositories
Zuricho/ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
Zuricho/ProteinDesignLabs
List of computational protein design research labs
Zuricho/AlphaFold3_Result_Visualize
A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
Zuricho/Alphafold_local
My guide to install Alphafold locally
Zuricho/FoldCraft
Work in progress
Zuricho/ParaFold_dev
ParaFold - under development
Zuricho/chroma_pipeline
Protein design pipeline for using Chroma, a protein structure generation model, for various tasks
Zuricho/zurtein
A python package for protein sequence and structure analysis
Zuricho/alphafold3_facts
Collection of trials, discussions, and tricks of AlphaFold3.
Zuricho/MSA_Visualize
Visualization of protein multiple sequence alignment.
Zuricho/unified_structure_format
A unified file format for all kinds of molecule structure. Including protein, small molecule, crystal.
Zuricho/LaTeX-Typora-Theme
A LaTeX-style for Typora. This theme makes Typora files look like LaTeX
Zuricho/Blade-Runner-Text-Game
Python based blade runner text game/unfinished/roguelike/self-designed
Zuricho/incaRNA
incaRNA is a deep learning model to predict RNA secondary structure and model confidence
Zuricho/My_Lab
PTM forcefield development repo.
Zuricho/Old_Zuricho
Personal website for Bozitao Zhong
Zuricho/ProMine
Zuricho/zurplot
Functions for creating figures
Zuricho/alphafold_wiki
AlphaFold Unofficial Wiki
Zuricho/kagome_HVQE
HVQE implementation of Kagome lattice. This project can calculate both ground state energy and exicted energies.
Zuricho/CCiC
Zuricho/CV
personal webpage for my curriculum vitae
Zuricho/deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
Zuricho/dnaplotlib
DNA plotting library for Python
Zuricho/Free_Hand_Sketch
Course project for SJTU CS420 Machine Learning course
Zuricho/gitalk.github.io
Gitalk is a modern comment component based on Github Issue and Preact.
Zuricho/Knowledge
Zuricho's personal knowledge base
Zuricho/Ultimate_Dogma
Personal website
Zuricho/Zuricho
Personal website for Bozitao Zhong
Zuricho/Zuricho.github.io
Here's my blog & homepage, it's under construction now!