Zuricho
Using AlphaFold and protein language model to solve protein engineerning, evolution, design challenges
Chinese University of Hong KongShenzhen
Pinned Repositories
A501-3DAC-AlphaFold
Here is the repository for scripts that utilized to achieve the results and figures in the manuscript entitled "Proteome-wide 3D structure prediction provides new insights into the ancestral metabolism of ancient archaea and bacteria"
AlphaFold3_Result_Visualize
A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
Alphafold_local
My guide to install Alphafold locally
chroma_pipeline
Protein design pipeline for using Chroma, a protein structure generation model, for various tasks
FoldCraft
Work in progress
MSA_Visualize
Visualization of protein multiple sequence alignment.
ParaFold_dev
ParaFold - under development
ParallelFold
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
ProteinDesignLabs
List of computational protein design research labs
zurtein
A python package for protein sequence and structure analysis
Zuricho's Repositories
Zuricho/CMAPoptimizer
Monte Carlo simulated annealing to optimize the CMAP potentials in molecular mechanics force fields with reweighting calculation
Zuricho/Easy_Cell_Automata
This is a cell automata program based on python. Currently for learning python basics
Zuricho/iGEM_crawler_2018SJTU
This project is to craw down some iGEM information from the iGEM website, the result is for statistics.
Zuricho/moderncv
A modern curriculum vitae class for LaTeX
Zuricho/Ramachandran_plot
Using biopython & matplotlib to draw different ramachandran plots. The phi psi angle are from AMBER forcefield simulation result & CPPTRAJ analyse
Zuricho/selenium-python
Selenium Python Bindings Documentation
Zuricho/Type-on-Strap
🎨 Simplistic, responsive jekyll based open source theme