Zuricho

Zuricho's Stars

• seyonechithrananda/bert-loves-chemistry

  bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.

  Language:Jupyter Notebook41664

• songlab-cal/tape

  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

  Language:Python673130

• cxhernandez/ipymol

  Control PyMOL sessions via IPython

  Language:Python5719

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2k507

• kuixu/alphafold

  Install alphafold on the local machine, get out of docker.

  Language:Python10133

• kalininalab/alphafold_non_docker

  AlphaFold2 non-docker setup

  Language:Shell348121

• lucidrains/invariant-point-attention

  Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module

  Language:Python15111

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13k2.3k

• RosettaCommons/trRosetta2

  Repository for publicly available deep learning models developed in Rosetta community

  Language:Python10720

• agemagician/ProtTrans

  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

  Language:Jupyter Notebook1.1k155

• marridG/2020-EI332

  [2020 Spring, SJTU] Computer Organization & Lab

  Language:Verilog61

• FabianFuchsML/se3-transformer-public

  code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503

  Language:Python50570

• lucidrains/se3-transformer-pytorch

  Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration with eventual Alphafold2 replication.

  Language:Python26624

• LPDI-EPFL/masif

  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

  Language:Python605157

• sjtug/SJTUBeamer

  上海交通大学 Beamer 模版 | Beamer template for Shanghai Jiao Tong University

  Language:TeX60864

• Discngine/fpocket

  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).

  Language:C30962

• churchlab/UniRep

  UniRep model, usage, and examples.

  Language:Python34296

• wangshusen/DeepLearning

  Language:TeX3.8k835

• SJTU-BioX/SJTU-BioX.github.io

  Homepage of SJTU-BioX-Shanghai, the iGEM team of Shanghai Jiao Tong University

  Language:JavaScript11

• whitews/FlowKit

  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

  Language:Python16043

• isayev/ASE_ANI

  ANI-1 neural net potential with python interface (ASE)

  Language:Python21955

• guyujun/pyrosetta-basic

  Language:Jupyter Notebook15238

• insilicomedicine/GENTRL

  Generative Tensorial Reinforcement Learning (GENTRL) model

  Language:Python613218

• wangshusen/DRL

  Deep Reinforcement Learning

  3.4k591

• open-mmlab/mmdetection

  OpenMMLab Detection Toolbox and Benchmark

  Language:Python29.9k9.5k

• Anuken/Mindustry

  The automation tower defense RTS

  Language:Java23k3k

• walkccc/CLRS

  📚 Solutions to Introduction to Algorithms Third Edition

  Language:Markdown4.8k1.3k

• soedinglab/hh-suite

  Remote protein homology detection suite.

  Language:C552136

• DSPsleeporg/smiles-transformer

  Original implementation of the paper "SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery" by Shion Honda et al.

  Language:Jupyter Notebook32259

• zenghongtu/saladict-desktop

  ✨✨桌面划词与翻译工具，聚合了 N 多词典，功能强大，支持 Windows 、 Mac 和 Linux。

  Language:JavaScript39645