a-r-j

ML Scientist @PrescientDesign / Tensor Jockey / PhD @ University of Cambridge Prev: MILA, X - The Moonshot Factory (FKA Google X), Relation Therapeutics

University of CambridgeBasel

Pinned Repositories

covid
Druggability analysis of SARS-CoV-2
2 3 01
CPDB
Cython implementation of PDB -> DataFrame parsing
Language:Cython20 2 10
DrugTranslatoR
R package for translating between drug identifiers using the Chemical Translation Service (CTS)
Language:R3 2 12
graphein
Protein Graph Library
Language:Jupyter Notebook1k 19 152131
graphtype
Type hinting for networkx Graphs
Language:Jupyter Notebook5 2 00
npview
CLI tools for quickly inspecting CSV/TSV & NumPy (.npy) array files
Language:Python2 2 10
ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
Language:Python192 6 2016
biopandas
Working with molecular structures in pandas DataFrames
Language:Python708 17 59121
gauche
A Library for Gaussian Processes in Chemistry
Language:Jupyter Notebook203 6 1621
VSCoding-Sequence
VSCode Extension for interactively visualising protein structure data in the editor
Language:TypeScript96 4 248

a-r-j's Repositories

a-r-j/graphein
Protein Graph Library
Language:Jupyter Notebook1k 19 152131
a-r-j/ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
Language:Python192 6 2016
a-r-j/CPDB
Cython implementation of PDB -> DataFrame parsing
Language:Cython20 2 10
a-r-j/graphtype
Type hinting for networkx Graphs
Language:Jupyter Notebook5 2 00
a-r-j/DrugTranslatoR
R package for translating between drug identifiers using the Chemical Translation Service (CTS)
Language:R3 2 12
a-r-j/covid
Druggability analysis of SARS-CoV-2
2 3 01
a-r-j/npview
CLI tools for quickly inspecting CSV/TSV & NumPy (.npy) array files
Language:Python2 2 10
a-r-j/optimallm
Optimise python functions with LLMs
Language:Python2 2 00
a-r-j/pytorch_geometric
Graph Neural Network Library for PyTorch
Language:Python2 1 0
a-r-j/TB-Resources
List of online databases and resources for Mycobacterium Tuberculosis
1 2 01
a-r-j/a-r-j
0 3 00
a-r-j/biopandas
Working with molecular structures in pandas DataFrames
Language:Python0 1 00
a-r-j/catnat
Language:R0 2 00
a-r-j/artisan
artisan: visual scope for coffee roasters
Language:Python1 0
a-r-j/crkbd-keymap
Keymaps for CRKBD
2 0
a-r-j/doom-emacs
An Emacs framework for the stubborn martian hacker
Language:Emacs Lisp2 0
a-r-j/dotfiles
general scripts/set ups I use across multiple machines
Language:Shell2 0
a-r-j/ethoscope
a platform from monitoring animal behaviour in real time from a raspberry pi
Language:Python2 0
a-r-j/FlowMO
Library for training Gaussian Processes on Molecules
Language:Python2 0
a-r-j/gnat
nat+GUI
Language:R2 0
a-r-j/graphein-binder
2 0
a-r-j/graphein-web
Language:Jupyter Notebook2 0
a-r-j/jamasb.io
Language:HTML2 1
a-r-j/loss-landscapes-gpu
Approximating neural network loss landscapes in low-dimensional parameter subspaces for PyTorch
Language:Python1 0
a-r-j/mmterm
View proteins and trajectories in the terminal
Language:Python1 0
a-r-j/molplotly
add-on to plotly which show molecule images on mouseover!
Language:Python1 0
a-r-j/peptirdle
A clone of the popular game Wordle made using React, Typescript, and Tailwind
Language:TypeScript1 0
a-r-j/ProtCHOIR
Protein Complexes and Homo Oligomeric Interfaces Resolver
Language:Python2 0
a-r-j/pymolcolorizer
Simple utility for coloring macromolecules in PyMOL
Language:Python2 0
a-r-j/vscode-restclient
REST Client Extension for Visual Studio Code
Language:TypeScript1 0