a-r-j/ProteinWorkshop

Issues

• 4v8m not found in raw directory. When processing go-bp dataset

  #96 opened 3 months ago by yangzhang33
  1

• Unable to donwload dataset ec_reaction

  #94 opened 3 months ago by yangzhang33
  9

• Corrupted File in GeneOntology

  #95 opened 3 months ago by AJB117
  1

• Unable to reproduce the results on fold classification task

  #91 opened 6 months ago by huangtinglin
  2

• Required batch attributes for GearNet encoder

  #73 opened 8 months ago by Katja-Jagd
  3

• Error encountered during training on GO datasets.

  #69 opened 8 months ago by gokceuludogan
  4

• Add `torchdrug` to project dependencies

  #70 opened 8 months ago by amorehead
  1

• Mismatch of dimensions for PTM data

  #61 opened 9 months ago by asaksager
  4

• Getting predictions for PTM model

  #62 opened 10 months ago by ann-las
  2

• Add a pre-trained model API

  #60 opened a year ago by a-r-j
  0

• Issues with feature-computations

  #56 opened a year ago by martinaegidius
  3

• Torch 2.0.1 unsupported by Poetry

  #13 opened a year ago by a-r-j
  2

• `fold_fold` dataset cannot be downloaded

  #54 opened a year ago by amorehead
  14

• `process` function of the `ProteinDataset` class iterates over tuples instead of PDB codes

  #51 opened a year ago by amorehead
  3

• unable to process mmtf file to pyg

  #39 opened a year ago by pengzhangzhi
  4

• Metal3D Download URL incorrect

  #27 opened a year ago by a-r-j
  1

• Highlight local pip install option in docs

  #29 opened a year ago by a-r-j
  2

• fail to activate poetry

  #34 opened a year ago by pengzhangzhi
  10

• Using processed datasets without a local copy of the PDB triggers download of raw data

  #23 opened a year ago by a-r-j
  1

• `constants.py` not correctly detecting env vars.

  #18 opened a year ago by a-r-j
  1