Pinned Repositories
Bioinfo4B
bpp-arpip
ARPIP: Ancestral sequence Reconstruction under PIP
MEDOBO
old_ProPIP
Progressive Multiple Sequence Alignment with Indel Evolution
ProGraphMSA
ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. Fork of ProGraphMSA+TR from https://sourceforge.net/projects/prographmsa
ProPIP
rust-phylo
Phylo library in Rust
swissrepeats
Delucchi, M.; Schaper, E.; Sachenkova, O.; Elofsson, A.; Anisimova, M. A New Census of Protein Tandem Repeats and Their Relationship with Intrinsic Disorder. Genes 2020, 11, 407.
tral
Tandem Repeat Annotation Library
webSTR-API
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
acg-team's Repositories
acg-team/tral
Tandem Repeat Annotation Library
acg-team/ProGraphMSA
ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. Fork of ProGraphMSA+TR from https://sourceforge.net/projects/prographmsa
acg-team/bpp-arpip
ARPIP: Ancestral sequence Reconstruction under PIP
acg-team/ProPIP
acg-team/webSTR-API
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
acg-team/rust-phylo
Phylo library in Rust
acg-team/Bioinfo4B
acg-team/MEDOBO
acg-team/rust-indelMaP
IndelMaP algorithm implementation in Rust
acg-team/STFT-matlab
acg-team/swissrepeats
Delucchi, M.; Schaper, E.; Sachenkova, O.; Elofsson, A.; Anisimova, M. A New Census of Protein Tandem Repeats and Their Relationship with Intrinsic Disorder. Genes 2020, 11, 407.
acg-team/twins_microbiome_pipeline
Bioinformatics processing of raw Illumina reads for microbiome analysis of twins (dada2)
acg-team/IndelViewer
Indel viewer software for ARPIP
acg-team/Relation-Extraction
acg-team/Selection-in-Genes-Course
acg-team/single-char-indel-ASR-preserves-long-indels
This repository includes the scripts used for analysis investigating the dynamics of indels in mammalian orthologous proteins and the examination of the ancestral reconstruction of multiple-character indels under the PIP.
acg-team/acg-team.github.io
acg-team/armrppipeline
Collection of scripts for analyzing Armadillo repeat proteins
acg-team/Bioinfo4B-STR
Short tandem repeat project for the course "Bioinformatics for Beginners"
acg-team/castor
acg-team/ConSTRain
A short tandem repeat variant caller that incorporates copy number information
acg-team/Indel-Pattern-Analysis-HIV
acg-team/indelMaP
acg-team/JATI
Initial attempt at JATI in Rust
acg-team/LBD-Demo
acg-team/primate_SLC6A3
Annotation of variable number tandem repeats (VNTRs) in primate SLC6A3 genes
acg-team/STR-density
Scripts and background to determine short tandem repeat (STR) densities in genes and genomes
acg-team/STRs-in-CRC
Notebooks and scripts for the analysis of short tandem repeat mutations in colorectal cancer data
acg-team/swissprot_human_strs
acg-team/TRAL-Result-Analysis
R package to get the most out of the results from TRAL