Pinned Repositories
Bioinfo4B
bpp-arpip
ARPIP: Ancestral sequence Reconstruction under PIP
MEDOBO
old_ProPIP
Progressive Multiple Sequence Alignment with Indel Evolution
ProGraphMSA
ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. Fork of ProGraphMSA+TR from https://sourceforge.net/projects/prographmsa
ProPIP
rust-phylo
Phylo library in Rust
swissrepeats
Delucchi, M.; Schaper, E.; Sachenkova, O.; Elofsson, A.; Anisimova, M. A New Census of Protein Tandem Repeats and Their Relationship with Intrinsic Disorder. Genes 2020, 11, 407.
tral
Tandem Repeat Annotation Library
webSTR-API
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
acg-team's Repositories
acg-team/old_ProPIP
Progressive Multiple Sequence Alignment with Indel Evolution
acg-team/SlippageSim
Code to simulate the evolution of tandam repeat proteins. Used for testing ProGraphMSA+TR (https://github.com/acg-team/ProGraphMSA). Forked from https://sourceforge.net/projects/prographmsa/.
acg-team/str_workshop