adamjtaylor
Director of Cancer Biology at @Sage-Bionetworks. PI and Imaging Data Lead for @ncihtan
@Sage-Bionetworks London, UK
Pinned Repositories
academic-kickstart
adamjtaylor.github.io
Website
generative_art
A space to explore generative art
miniature
Use dimensionality reduction to create thumnails for high-dimensional imaging
tidytuesday
infer_hallmarks_of_cancer
LLM inference of Hallmarks of Cancer from text
nf-histoqc
A Nextflow wrapper for HistoQC
data-models
Schema.org Data Models for HTAN
nf-imagecleaner
nf-imagecleaner is a Nextflow pipeline that prepares images for upload to HTAN by removing sensitive data
nf-artist
A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.
adamjtaylor's Repositories
adamjtaylor/miniature
Use dimensionality reduction to create thumnails for high-dimensional imaging
adamjtaylor/auto-minerva
adamjtaylor/paperpile-bibtex
adamjtaylor/aws-htan-infra
AWS CloudFormation templates for deploying HTAN infrastructure
adamjtaylor/bioformats2raw
Bio-Formats image file format to raw format converter
adamjtaylor/codeocean-sc-tutorial
adamjtaylor/contactsheet
adamjtaylor/data-models
Schema.org Data Models for HTAN
adamjtaylor/data_curator_config
Project configurations for the Data Curator App
adamjtaylor/grandqc
GrandQC tool for tissue detection and quality control in pathology
adamjtaylor/HistoQC
HistoQC is an open-source quality control tool for digital pathology slides
adamjtaylor/htan-artist
A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.
adamjtaylor/htan-artist-launcher
adamjtaylor/htan-portal
The HTAN Data Portal
adamjtaylor/mcmicro
Multiple-choice microscopy pipeline
adamjtaylor/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
adamjtaylor/nextflow-infra
AWS CloudFormation templates for deploying Nextflow infrastructure
adamjtaylor/nf-synindex
Nextflow pipeline for indexing S3 objects in Synapse
adamjtaylor/ome-tiff-pyramid-tools
Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
adamjtaylor/py-dcqc
Python package for performing quality control (QC) for data coordination (DC)
adamjtaylor/retype
adamjtaylor/scicomp-provisioner
An service to auto provision resources
adamjtaylor/scimap
Spatial Single-Cell Analysis Toolkit
adamjtaylor/streamlit-snowflake-demo
adamjtaylor/synapse-web-monorepo
Monorepo for Synapse Web projects
adamjtaylor/synapsegenie
This package can deploy a AACR GENIE like project on Synapse and perform validation and processing of files.
adamjtaylor/synapsePythonClient
Programmatic interface to Synapse services for Python
adamjtaylor/tablet-classification
adamjtaylor/test-datasets
Test data to be used for automated testing with the nf-core pipelines
adamjtaylor/ucie