ncihtan/data-models

Issues

• Sync released data models to BQ tables

  #420 opened 4 months ago by adamjtaylor
  3

• Implement component to represent "Third party re-analysed demographics information"

  #450 opened a month ago by aclayton555
  0

• renewal -- update data model attributes and descriptions to disambiguate index/days to fields

  #444 opened 2 months ago by jen-dfci
  2

• HTAN 1.0 Data Model: Archive Activities

  #448 opened a month ago by aclayton555
  1

• Fix ExSeq Minimal Schema name

  #447 opened a month ago by adamjtaylor
  1

• Add GitHub actions to build conditional dependencies table for HTAN docs

  #442 opened 2 months ago by aditigopalan
  4

• Errant fields in CDS Sequencing template

  #434 opened 3 months ago by aclayton555
  7

• Decision: Use contentType annotation for datasets/folders [informs DCA config]

  #383 opened 5 months ago by adamjtaylor
  1

• HTAN 1.0 Data Model: sunset planning

  #389 opened 5 months ago by aclayton555
  4

• Remove stripe calling validation rule

  #445 opened 2 months ago by adamjtaylor
  2

• Remove cDNA attribute from Multiplexed CITE-seq Level 1

  #436 opened 2 months ago by PozhidayevaDarya
  2

• Channel Metadata Antibody Role Valid Value

  #431 opened 3 months ago by PozhidayevaDarya
  2

• Restore link to help docs in DCA

  #433 opened 3 months ago by aclayton555
  1

• Obituary Missing from Cause of Death Source in Demographics Template

  #422 opened 3 months ago by PozhidayevaDarya
  0

• Update the description of Biospecimen -> Histologic Morphology Code

  #429 opened 3 months ago by aclayton555
  6

• Create external facing data model docs

  #354 opened 3 months ago by aclayton555
  8

• Correct center ID usage + destination check

  #428 opened 3 months ago by aclayton555
  0

• Add Participant Vital Status Update and Precancer Diagnosis components to DCA config

  #424 opened 3 months ago by adamjtaylor
  0

• Update Node version in actions

  #414 opened 3 months ago by adamjtaylor
  4

• Implement minimal template for multiplex-CITE-seq assay

  #394 opened 4 months ago by aclayton555
  3

• Implement minimal template for microarray data

  #393 opened 4 months ago by aclayton555
  4

• Review data model integrity checks

  #416 opened 4 months ago by aclayton555
  0

• Update permissible values to v5 of ICD-O codes for Clinical Tier 1 Diagnosis Morphology and Primary Diagnosis

  #356 opened 4 months ago by kristenanton
  4

• Update permissible value list for Clinical Tier 1 Diagnosis: 'Precancerous Condition Type'

  #392 opened 4 months ago by kristenanton
  3

• Develop and implement HTAN/CDS seq template

  #396 opened 4 months ago by aclayton555
  19

• Hi-C level 3 fixes

  #381 opened 4 months ago by adamjtaylor
  5

• Investigate adoption/support/applicability of LinkML to maintain schemas for HTAN

  #372 opened 6 months ago by aclayton555
  1

• Onboarding Jess Vera to HTAN Data Model!

  #390 opened 4 months ago by aclayton555
  1

• Approach for 'none'

  #382 opened 5 months ago by aclayton555
  2

• Add permissible value to Biospecimen: Storage Method

  #406 opened 4 months ago by kristenanton
  1

• Add option `Unfixed` for `Fixative type`

  #412 opened 4 months ago by adamjtaylor
  0

• Update Data Models README

  #397 opened 4 months ago by aclayton555
  1

• Model integrity failure: Check all attributes are unique

  #403 opened 4 months ago by adamjtaylor
  1

• Add Xenium and CosMx to dca-template-config.json

  #400 opened 5 months ago by clarisse-lau
  1

• [BulkRNAseq Level 2] Updates to accommodate Salmon files

  #399 opened 5 months ago by aclayton555
  2

• Investigate odd csv -> json-ld behaviour

  #368 opened 6 months ago by aclayton555
  12

• Onboarding Aditi Gopalan to HTAN Data Model!

  #371 opened 5 months ago by aclayton555
  3

• Update enumerated values in Publication "Data Type" field to include all assay types

  #364 opened 5 months ago by alexeliotlash
  2

• Implement draft Xenium RFC in data model

  #369 opened 5 months ago by adamjtaylor
  1

• Implement draft CosMX RFC in data model

  #370 opened 5 months ago by adamjtaylor
  1

• Add Illumina NextSeq 2000 as Sequencing Platform valid value

  #384 opened 5 months ago by clarisse-lau
  0

• Update Library Construction Method for scRNAseq

  #374 opened 5 months ago by jen-dfci
  1

• Publications manifest PV additions/validation rule enhancement

  #361 opened 5 months ago by alexeliotlash
  1

• Fix Github action typing_extensions dependency erorr

  #377 opened 5 months ago by adamjtaylor
  6

• Link to the docs that describe the config file are broken

  #362 opened 5 months ago by Gibbsdavidl
  1

• Add permissible value to Bulk RNA-seq Level 3 'File Format' data element

  #359 opened 6 months ago by kristenanton
  1

• Updates to AccessoryManifest for Data Portal

  #365 opened 6 months ago by clarisse-lau
  1

• Implement 'ProtectAges' validation rule on age-related attributes

  #367 opened 6 months ago by aclayton555
  0

• Create 'exseq minimal' component based on 'other assay'

  #358 opened 6 months ago by aclayton555
  1

• move Precancerous Condition Type from Clinical Tier 2 to Clinical Tier 1 Diagnosis

  #355 opened 6 months ago by kristenanton
  5