ncihtan/data-models

Update Library Construction Method for scRNAseq

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jen-dfci commented

Information

Proposed change:

Add "10x Multiome", "10x FLEX", and "10x GEM 3’" and "10x GEM 5’" to scRNAseq Library Construction Method.

Dicussion link:

Sarah Mazzilli has suggested adding additional methods for Library Construction Method to reflect new tech and be usable for multiplex CITE-seq. (see HTAN-288).

How important is this feature?

  • 🌗 Medium - can do work without it; but it's important (e.g. to save time or for convenience)

(can ingest data, but unable to correctly site Library Contruction Method.)

When will use cases depending on this become relevant?

  • Short-term - 2-4 weeks (HTAN CASI CITE-seq data ingestion)

Additional context

Add any other context or screenshots about the feature request here

Implementation checklist

  • Branch created
  • HTAN.model.csv editied and pushed
  • HTAN.model.jsonld validated and created by Github action
  • PR opened
  • PR approved
  • PR merged into main
  • New Component added to ncihtan/HTAN-data-curator (if required)
  • DCA update requested
  • DCA updated
aditigopalan commented

@adamjtaylor do we need to add a new component to the data-curator repo?