Pinned Repositories
accessoryfunctions
Frequently used functions
antismash-parse
Automate_kSNP
autorun
bioconda-recipes
Conda recipes for the bioconda channel.
coregenome
GDCS
metagenomeFilter
COWBAT
CFIA OLC Workflow for Bacterial Assembly and Typing
ftir_renamer
adamkoziol's Repositories
adamkoziol/antismash-parse
adamkoziol/accessoryfunctions
Frequently used functions
adamkoziol/autorun
adamkoziol/bioconda-recipes
Conda recipes for the bioconda channel.
adamkoziol/coregenome
adamkoziol/GDCS
adamkoziol/metagenomeFilter
adamkoziol/BioTools
Program wrappers and frequently used tasks.
adamkoziol/centrifugeAutomator
adamkoziol/genomeAnnouncements
adamkoziol/GenomeQAML
:camel: Machine learning to assess bacterial draft genme assembly quality
adamkoziol/KmerContam
Intra-species contamination finding making use of kmers
adamkoziol/kmersippr
adamkoziol/minion_amplicon
adamkoziol/mixedReferenceMapping
adamkoziol/ncbidownload
adamkoziol/OLCTools
Python package for commonly used tools at OLC.
adamkoziol/peppers
adamkoziol/PipelineTypingOnly
adamkoziol/Plasmid_Assembler
Finds plasmids in raw reads, generates sequences, does plasmid typing
adamkoziol/pythonGeneSeekr
adamkoziol/reformatfasta
adamkoziol/RefSeqFTPDownload
adamkoziol/RenameGUI
adamkoziol/reportaggregator
adamkoziol/seqIDmerger
adamkoziol/sipprcommon
Collects commonly used files/modules used by the sipprverse
adamkoziol/SipprModeling
adamkoziol/SNPprimers
adamkoziol/vSNP
vSNP -- bacterial validation SNP analysis tool -- USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Brucella sp. SNP pipeline. Genotyping from whole genome sequence (WGS) outputting BAM, VCF, SNP tables and phylogentic trees.