adamlmaclean

AABayes.jl

Approximate Approximate Bayesian Computation

Cell-Cell-Communication

Code to accompany the paper bioRxiv: 10.1101/2021.03.31.437948.

compbio-edi

Curated summary of efforts to promote equity, diversity, and inclusion in computational biology PhD programs and societies.

covid19-review

A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19

data-science-seminar

Topics in Data Science

julia-dynsys-resources

Dynamical systems modeling in Julia with 🐜 & 🐟

ModelingMDSCs

Code for Myeloid-derived suppressor cell dynamics control outcomes in the metastatic niche

popInfer

GRN inference with joint scRNA-seq + scATAC-seq data

RVAgene

Recurrent Variational Auto gene encoder

RSoptSC

Cell-cell communication and lineage inference for scRNA-seq data

adamlmaclean/julia-dynsys-resources

Dynamical systems modeling in Julia with 🐜 & 🐟

adamlmaclean/AABayes.jl

Approximate Approximate Bayesian Computation

adamlmaclean/Cell-Cell-Communication

Code to accompany the paper bioRxiv: 10.1101/2021.03.31.437948.

adamlmaclean/compbio-edi

Curated summary of efforts to promote equity, diversity, and inclusion in computational biology PhD programs and societies.

adamlmaclean/covid19-review

A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19

adamlmaclean/data-science-seminar

Topics in Data Science

adamlmaclean/DifferentialEquations.jl

Julia suite for high-performance solvers of differential equations

adamlmaclean/InformationMeasures.jl

Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.

adamlmaclean/RSoptSC

Similarity matrix optimization for cell clustering, lineage, and signaling inference

adamlmaclean/MCSTracker

adamlmaclean/ModelingMDSCs

Code for Myeloid-derived suppressor cell dynamics control outcomes in the metastatic niche

adamlmaclean/nielab.github.io

Nie Lab Website

adamlmaclean/popInfer

adamlmaclean/PyDSTool.jl

A wrapper for the PyDSTool library

adamlmaclean/RVAgene

Recurrent Variational Auto gene encoder

adamlmaclean/scEpath

a novel tool for analyzing single cell RNA-seq data

adamlmaclean/seurat

R toolkit for single cell genomics

adamlmaclean/SoCalSysBio2023

adamlmaclean/SoptSC

SOptSC for single cell data analysis

adamlmaclean/stan

Stan development repository (home page is linked below). The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.

adamlmaclean/Stan.jl

Julia package to use Stan as an external program

adamlmaclean/stemcell-superhero

Interactive cell differentiation model demo

adamlmaclean/Tumor-Immune-EMT

A repository for writing this paper.

adamlmaclean/tumor-immune-emt-code

Code associated with Bergman, Karikomi, Nie, MacLean (2019). Modeling the competing effects of the immune system and EMT on tumor development.

adamlmaclean/Warne2018

Codes associated with Warne, Baker and Simpson (2018) Implementations of simulation and inference algorithms for stochastic reaction networks: from basic concepts to state-of-the-art

adamlmaclean/www.julialang.org

Julia Project website