Pinned Repositories
2017-03-29-Software_Carpentry_Munich_Teaching_Material
Teaching Material of the Software Carpentry Munich 2017-03-29
2018-01-23-Intermediate_Scientific_Computing_Skills_Munich
Scientific Computing Skills - Intermediate Workshop Munich (2018-01-23)
adamsorbie.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
BenakisLab
Scripts and pipelines used for microbiota and metabolome analysis
Coleman_Lobner_ATF6_Dysbiosis_Gastroenterology_2018
machine learning in R
intro-to-HPC-course-2020
Introduction to HPC/working on the LRZ linux cluster
Stroke_Microbiota_reproducibility
Repository for Sorbie, Jimenez and Benakis, iScience 2022
Supervised_Classification_Haller_Lab
R script for performing supervised classification of microbiota profiles
unix_shell_course-2020-02-14
Short Unix course 2020
adamsorbie's Repositories
adamsorbie/Supervised_Classification_Haller_Lab
R script for performing supervised classification of microbiota profiles
adamsorbie/Coleman_Lobner_ATF6_Dysbiosis_Gastroenterology_2018
machine learning in R
adamsorbie/2017-03-29-Software_Carpentry_Munich_Teaching_Material
Teaching Material of the Software Carpentry Munich 2017-03-29
adamsorbie/adamsorbie.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
adamsorbie/BenakisLab
Scripts and pipelines used for microbiota and metabolome analysis
adamsorbie/intro-to-HPC-course-2020
Introduction to HPC/working on the LRZ linux cluster
adamsorbie/Stroke_Microbiota_reproducibility
Repository for Sorbie, Jimenez and Benakis, iScience 2022
adamsorbie/unix_shell_course-2020-02-14
Short Unix course 2020
adamsorbie/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
adamsorbie/atf6_public_data
adamsorbie/AV_kinetic
adamsorbie/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
adamsorbie/bash_script_one_liners
Useful BASH scripts and one liners for working with Microbiome/NGS data
adamsorbie/bio_tools
Simple scripts useful for molecular biology
adamsorbie/comparative_genomics
Comparative genomic analysis of related taxa of those enriched in ATF6 mice with tumors
adamsorbie/denovo_to_picrust
Pipeline for using de-novo picked otus with PICRUSt
adamsorbie/GGMP-Regional-variations
adamsorbie/Gut_brain_axis_course-Bioinformatic_analysis
The microbiome-gut-brain axis: Concepts and methods in experimental stroke research – Bioinformatic analysis
adamsorbie/helper_scripts
Collection of scripts used for converting data types, data import etc
adamsorbie/IntroToJulia
A Deep Introduction to Julia for Data Science and Scientific Computing
adamsorbie/Microbiome
Scripts for microbiome analysis
adamsorbie/microbiomeutilities
The is mostly a wrapper tool using phyloseq and microbiome R packages. Apart for some simple scripts, this package has a single function generates a HTML report with preliminary QC, Alpha Diversity, Ordination and Composition analysis of OTU tables.
adamsorbie/microbiota_analysis_templates
Rmarkdown and other analysis templates from the Benakis Lab
adamsorbie/Neuroimmunological-methods-in-stroke-research-course-2023
Data analysis part of the 2023 Neuroimmunolgical methods in stroke research at the ISD
adamsorbie/Neuroimmunological-methods-in-stroke-research-course-2024
Data analysis part of the 2024 Neuroimmunolgical methods in stroke research at the ISD
adamsorbie/plotting
Collection of Python and R Scripts for commonly used plots
adamsorbie/Rhea
A set of R scripts for the analysis of microbial profiles
adamsorbie/Spike-in_analysis
This repo contains a python script to facilitate processing of 16S sequencing data with Spikes to calculate absolute abundance.
adamsorbie/Supervised_classification_AV_AVI
Phenotype prediction in AV and AVI mouse lines based on microbiota abundance and alpha diversity
adamsorbie/tsnemicrobiota
t-distributed stochastic neighbor embedding for microbiota data