Pinned Repositories
2015-07-09-Iceland
Template for workshop websites.
DiffPath
FindingInfo
khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
khmer-protocols
ngs_analysis
Scripts for analysis of MiSeq/HiSeq data: quality control, mapping, and so forth.
ScarTrek
Python package for identifying genetic changes in whole-genome sequencing data
Simulation
Simulate Illumina next-gen reads to determine the settings that will allow detection of rare variants (freq 0.001).
SNPTB
A Bioinformatics Pipeline for Analyses of Mycobacterium tuberculosis Whole Genome Sequencing Data
theproj
Test project for software carpentry
aditi9783's Repositories
aditi9783/FindingInfo
aditi9783/ScarTrek
Python package for identifying genetic changes in whole-genome sequencing data
aditi9783/Simulation
Simulate Illumina next-gen reads to determine the settings that will allow detection of rare variants (freq 0.001).
aditi9783/SNPTB
A Bioinformatics Pipeline for Analyses of Mycobacterium tuberculosis Whole Genome Sequencing Data
aditi9783/theproj
Test project for software carpentry
aditi9783/2015-07-09-Iceland
Template for workshop websites.
aditi9783/DiffPath
aditi9783/khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
aditi9783/khmer-protocols
aditi9783/ngs_analysis
Scripts for analysis of MiSeq/HiSeq data: quality control, mapping, and so forth.
aditi9783/pathwayAnalysis
Finding differentially expressed pathways from RNAseq data
aditi9783/Scar_manuscript_scripts
Scripts for analyses of scar data and data visualization, identifying evolutionarily independent isolates, and enumerating population level unique scar occurrences
aditi9783/scikit-learn
scikit-learn: machine learning in Python
aditi9783/shell-novice
Software Carpentry introduction to the shell for novices.
aditi9783/TB_latency_scripts
Scripts for data analysis, SNP incidence modeling, dN/dS calculation
aditi9783/variantReconstruct
Constructing genomic variants from Illumina reads of a mixed population