Scripts for analyses of scar data and data visualization, identifying evolutionarily independent isolates, and enumerating population level unique scar occurrences
-
Scripts in data_analysis do statistical tests of meta data generated from genomic data, and for visualizing the results.
-
Scripts in evol_indep_isolates generate a list of isolates from a phylogenetic tree (in newick format) that are evolutionarily independent.
-
Scripts in indep_scar_events count the number of scar clades in phylogenetic trees in newick format.